Hb_008315_010

Information

Type -
Description -
Location Contig8315: 3217-3975
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43820g
description hypothetical protein
nr
ID XP_012448844.1
description PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008315_010 0.0 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
2 Hb_002401_020 0.3512699448 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
3 Hb_141881_010 0.3600551485 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000094_030 0.3710965758 - - -
5 Hb_001427_030 0.3920194586 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000107_180 0.3978787357 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
7 Hb_097969_010 0.3979436359 - - F-box/LRR-repeat protein, putative [Ricinus communis]
8 Hb_000340_120 0.3990760647 - - PREDICTED: uncharacterized protein LOC103406091 [Malus domestica]
9 Hb_002874_140 0.4054051699 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
10 Hb_011174_060 0.4078499307 - - -
11 Hb_005565_070 0.4091559717 - - conserved hypothetical protein [Ricinus communis]
12 Hb_053272_010 0.412062968 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
13 Hb_145157_010 0.4140082124 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
14 Hb_004076_040 0.419561259 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004109_360 0.4219547448 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Jatropha curcas]
16 Hb_006494_010 0.425542499 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_007576_060 0.4269547553 - - -
18 Hb_092706_010 0.4282756492 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
19 Hb_000442_110 0.4285046399 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
20 Hb_001408_070 0.4300645826 - - -

Gene co-expression network

sample Hb_008315_010 Hb_008315_010 Hb_002401_020 Hb_002401_020 Hb_008315_010--Hb_002401_020 Hb_141881_010 Hb_141881_010 Hb_008315_010--Hb_141881_010 Hb_000094_030 Hb_000094_030 Hb_008315_010--Hb_000094_030 Hb_001427_030 Hb_001427_030 Hb_008315_010--Hb_001427_030 Hb_000107_180 Hb_000107_180 Hb_008315_010--Hb_000107_180 Hb_097969_010 Hb_097969_010 Hb_008315_010--Hb_097969_010 Hb_069338_010 Hb_069338_010 Hb_002401_020--Hb_069338_010 Hb_001124_200 Hb_001124_200 Hb_002401_020--Hb_001124_200 Hb_011794_100 Hb_011794_100 Hb_002401_020--Hb_011794_100 Hb_000005_140 Hb_000005_140 Hb_002401_020--Hb_000005_140 Hb_053272_010 Hb_053272_010 Hb_002401_020--Hb_053272_010 Hb_009662_070 Hb_009662_070 Hb_002401_020--Hb_009662_070 Hb_002253_090 Hb_002253_090 Hb_141881_010--Hb_002253_090 Hb_012098_090 Hb_012098_090 Hb_141881_010--Hb_012098_090 Hb_141881_010--Hb_000107_180 Hb_000529_200 Hb_000529_200 Hb_141881_010--Hb_000529_200 Hb_016567_010 Hb_016567_010 Hb_141881_010--Hb_016567_010 Hb_000272_040 Hb_000272_040 Hb_141881_010--Hb_000272_040 Hb_000422_070 Hb_000422_070 Hb_000094_030--Hb_000422_070 Hb_000094_030--Hb_000107_180 Hb_004917_030 Hb_004917_030 Hb_000094_030--Hb_004917_030 Hb_004109_180 Hb_004109_180 Hb_000094_030--Hb_004109_180 Hb_003642_020 Hb_003642_020 Hb_000094_030--Hb_003642_020 Hb_000457_190 Hb_000457_190 Hb_000094_030--Hb_000457_190 Hb_010137_060 Hb_010137_060 Hb_001427_030--Hb_010137_060 Hb_000016_130 Hb_000016_130 Hb_001427_030--Hb_000016_130 Hb_000130_260 Hb_000130_260 Hb_001427_030--Hb_000130_260 Hb_003663_060 Hb_003663_060 Hb_001427_030--Hb_003663_060 Hb_007922_020 Hb_007922_020 Hb_001427_030--Hb_007922_020 Hb_012506_060 Hb_012506_060 Hb_001427_030--Hb_012506_060 Hb_000107_180--Hb_004917_030 Hb_000107_180--Hb_002253_090 Hb_001405_140 Hb_001405_140 Hb_000107_180--Hb_001405_140 Hb_000099_140 Hb_000099_140 Hb_000107_180--Hb_000099_140 Hb_004088_050 Hb_004088_050 Hb_000107_180--Hb_004088_050 Hb_028487_090 Hb_028487_090 Hb_097969_010--Hb_028487_090 Hb_002374_130 Hb_002374_130 Hb_097969_010--Hb_002374_130 Hb_187951_010 Hb_187951_010 Hb_097969_010--Hb_187951_010 Hb_002870_050 Hb_002870_050 Hb_097969_010--Hb_002870_050 Hb_037281_010 Hb_037281_010 Hb_097969_010--Hb_037281_010 Hb_002860_020 Hb_002860_020 Hb_097969_010--Hb_002860_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.101624 0.0693422 0.0448706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.125216 0 0 0.123997

CAGE analysis