Hb_008318_010

Information

Type -
Description -
Location Contig8318: 413-1294
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11670g
description hypothetical protein
nr
ID XP_012065779.1
description PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
swissprot
ID Q58E77
description WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1
trembl
ID A0A067LHD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06526 PE=4 SV=1
Gene Ontology
ID GO:0080008
description wd repeat-containing protein 82-b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008318_010 0.0 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
2 Hb_003683_080 0.1282824057 - - Angio-associated migratory cell protein, putative [Ricinus communis]
3 Hb_001950_120 0.1381902704 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
4 Hb_000317_410 0.1401061209 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
5 Hb_021056_020 0.1559654975 - - plasma membrane H+-ATPase [Hevea brasiliensis]
6 Hb_000010_260 0.1595759944 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
7 Hb_008695_040 0.1621715356 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
8 Hb_000840_190 0.1650737155 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
9 Hb_001387_020 0.1653906577 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
10 Hb_001824_010 0.1698154383 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_000483_250 0.1713528114 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
12 Hb_008699_020 0.1715644716 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
13 Hb_000120_590 0.1734979469 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
14 Hb_005056_060 0.1751571618 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
15 Hb_000080_210 0.1765005881 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
16 Hb_001688_020 0.1770347574 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
17 Hb_000567_030 0.1776772607 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
18 Hb_000795_060 0.1790056521 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
19 Hb_001009_300 0.1801654823 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
20 Hb_001769_100 0.1816713155 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]

Gene co-expression network

sample Hb_008318_010 Hb_008318_010 Hb_003683_080 Hb_003683_080 Hb_008318_010--Hb_003683_080 Hb_001950_120 Hb_001950_120 Hb_008318_010--Hb_001950_120 Hb_000317_410 Hb_000317_410 Hb_008318_010--Hb_000317_410 Hb_021056_020 Hb_021056_020 Hb_008318_010--Hb_021056_020 Hb_000010_260 Hb_000010_260 Hb_008318_010--Hb_000010_260 Hb_008695_040 Hb_008695_040 Hb_008318_010--Hb_008695_040 Hb_003683_080--Hb_000010_260 Hb_001387_020 Hb_001387_020 Hb_003683_080--Hb_001387_020 Hb_000080_210 Hb_000080_210 Hb_003683_080--Hb_000080_210 Hb_000483_250 Hb_000483_250 Hb_003683_080--Hb_000483_250 Hb_026048_070 Hb_026048_070 Hb_003683_080--Hb_026048_070 Hb_001769_100 Hb_001769_100 Hb_001950_120--Hb_001769_100 Hb_012265_010 Hb_012265_010 Hb_001950_120--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001950_120--Hb_003623_050 Hb_000449_040 Hb_000449_040 Hb_001950_120--Hb_000449_040 Hb_000645_190 Hb_000645_190 Hb_001950_120--Hb_000645_190 Hb_001688_020 Hb_001688_020 Hb_000317_410--Hb_001688_020 Hb_002333_080 Hb_002333_080 Hb_000317_410--Hb_002333_080 Hb_001824_010 Hb_001824_010 Hb_000317_410--Hb_001824_010 Hb_181600_010 Hb_181600_010 Hb_000317_410--Hb_181600_010 Hb_000318_100 Hb_000318_100 Hb_000317_410--Hb_000318_100 Hb_000329_650 Hb_000329_650 Hb_000317_410--Hb_000329_650 Hb_021056_020--Hb_008695_040 Hb_002609_210 Hb_002609_210 Hb_021056_020--Hb_002609_210 Hb_009711_020 Hb_009711_020 Hb_021056_020--Hb_009711_020 Hb_000446_030 Hb_000446_030 Hb_021056_020--Hb_000446_030 Hb_000030_290 Hb_000030_290 Hb_021056_020--Hb_000030_290 Hb_021056_020--Hb_001824_010 Hb_000083_090 Hb_000083_090 Hb_000010_260--Hb_000083_090 Hb_001136_060 Hb_001136_060 Hb_000010_260--Hb_001136_060 Hb_000010_260--Hb_026048_070 Hb_000010_260--Hb_000483_250 Hb_000010_260--Hb_002609_210 Hb_000840_190 Hb_000840_190 Hb_008695_040--Hb_000840_190 Hb_008695_040--Hb_001824_010 Hb_001421_060 Hb_001421_060 Hb_008695_040--Hb_001421_060 Hb_002596_040 Hb_002596_040 Hb_008695_040--Hb_002596_040 Hb_076693_030 Hb_076693_030 Hb_008695_040--Hb_076693_030 Hb_002805_220 Hb_002805_220 Hb_008695_040--Hb_002805_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466511 0.143038 0.156614 0.196254 0.147289 0.774766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7228 1.26136 0.255637 0.885967 0.378528

CAGE analysis