Hb_008326_010

Information

Type -
Description -
Location Contig8326: 18461-28901
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID AAS90666.1
description putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q75HQ1
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0048I21.1 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008326_010 0.0 - - putative polyprotein [Oryza sativa Japonica Group]
2 Hb_115376_010 0.2457076479 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_002599_040 0.2540675667 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_003005_040 0.2814811729 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_016748_010 0.2843715637 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_077935_010 0.2916989361 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_007054_050 0.2935378259 - - -
8 Hb_000307_230 0.2980541381 - - -
9 Hb_008730_010 0.3019865584 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_001062_020 0.3073661347 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
11 Hb_043708_010 0.3089452382 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_002243_070 0.3098685579 - - sodium-bile acid cotransporter, putative [Ricinus communis]
13 Hb_170559_010 0.3208447108 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_131102_010 0.3272873564 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_003362_020 0.3276819918 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
16 Hb_000060_060 0.3308647993 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
17 Hb_172388_010 0.3334471754 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
18 Hb_001153_130 0.3420389834 - - unnamed protein product [Vitis vinifera]
19 Hb_000399_010 0.34299819 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_093824_010 0.3445953817 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]

Gene co-expression network

sample Hb_008326_010 Hb_008326_010 Hb_115376_010 Hb_115376_010 Hb_008326_010--Hb_115376_010 Hb_002599_040 Hb_002599_040 Hb_008326_010--Hb_002599_040 Hb_003005_040 Hb_003005_040 Hb_008326_010--Hb_003005_040 Hb_016748_010 Hb_016748_010 Hb_008326_010--Hb_016748_010 Hb_077935_010 Hb_077935_010 Hb_008326_010--Hb_077935_010 Hb_007054_050 Hb_007054_050 Hb_008326_010--Hb_007054_050 Hb_001062_020 Hb_001062_020 Hb_115376_010--Hb_001062_020 Hb_007790_040 Hb_007790_040 Hb_115376_010--Hb_007790_040 Hb_000307_230 Hb_000307_230 Hb_115376_010--Hb_000307_230 Hb_002791_020 Hb_002791_020 Hb_115376_010--Hb_002791_020 Hb_115376_010--Hb_002599_040 Hb_002599_040--Hb_000307_230 Hb_000060_060 Hb_000060_060 Hb_002599_040--Hb_000060_060 Hb_008730_010 Hb_008730_010 Hb_002599_040--Hb_008730_010 Hb_106815_010 Hb_106815_010 Hb_002599_040--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_002599_040--Hb_000614_270 Hb_181240_010 Hb_181240_010 Hb_003005_040--Hb_181240_010 Hb_004324_080 Hb_004324_080 Hb_003005_040--Hb_004324_080 Hb_006132_030 Hb_006132_030 Hb_003005_040--Hb_006132_030 Hb_004734_050 Hb_004734_050 Hb_003005_040--Hb_004734_050 Hb_001229_020 Hb_001229_020 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010 Hb_016734_030 Hb_016734_030 Hb_016748_010--Hb_016734_030 Hb_000120_040 Hb_000120_040 Hb_016748_010--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_016748_010--Hb_006420_050 Hb_000111_110 Hb_000111_110 Hb_016748_010--Hb_000111_110 Hb_000122_210 Hb_000122_210 Hb_016748_010--Hb_000122_210 Hb_011986_010 Hb_011986_010 Hb_077935_010--Hb_011986_010 Hb_077935_010--Hb_003005_040 Hb_000460_070 Hb_000460_070 Hb_077935_010--Hb_000460_070 Hb_077935_010--Hb_007054_050 Hb_077935_010--Hb_001229_020 Hb_007054_050--Hb_000460_070 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00336415 0.00552447 0 0 0.00314731 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0179769 0.0115493 0.00474102 0.051563

CAGE analysis