Hb_008376_020

Information

Type -
Description -
Location Contig8376: 29192-30679
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011476mg
description hypothetical protein
nr
ID KDP21650.1
description hypothetical protein JCGZ_03321 [Jatropha curcas]
swissprot
ID Q8VZW3
description Probable chalcone--flavonone isomerase 3 OS=Arabidopsis thaliana GN=CHI3 PE=1 SV=1
trembl
ID A0A067JNS6
description Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_03321 PE=3 SV=1
Gene Ontology
ID GO:0045430
description probable chalcone--flavonone isomerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60019: 29128-30394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008376_020 0.0 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
2 Hb_000609_020 0.0587038555 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_000847_120 0.0630462917 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
4 Hb_001004_130 0.0862300299 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
5 Hb_000000_200 0.0883760348 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
6 Hb_000645_250 0.0898863932 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
7 Hb_006573_250 0.1032433168 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
8 Hb_000836_260 0.1044590325 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_001300_140 0.1104640101 - - -
10 Hb_079394_010 0.1155678248 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_032223_020 0.116841367 - - ATP binding protein, putative [Ricinus communis]
12 Hb_099157_010 0.1182824752 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
13 Hb_010334_050 0.1221358956 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005333_210 0.1243928393 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
15 Hb_006916_020 0.1303497127 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
16 Hb_000751_070 0.1380604735 - - -
17 Hb_004010_090 0.1382316239 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000751_060 0.1412192713 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
19 Hb_000753_180 0.1430791379 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
20 Hb_178703_010 0.1438112562 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_008376_020 Hb_008376_020 Hb_000609_020 Hb_000609_020 Hb_008376_020--Hb_000609_020 Hb_000847_120 Hb_000847_120 Hb_008376_020--Hb_000847_120 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_000000_200 Hb_000000_200 Hb_008376_020--Hb_000000_200 Hb_000645_250 Hb_000645_250 Hb_008376_020--Hb_000645_250 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250 Hb_000609_020--Hb_000000_200 Hb_000609_020--Hb_000847_120 Hb_010334_050 Hb_010334_050 Hb_000609_020--Hb_010334_050 Hb_000609_020--Hb_000645_250 Hb_099157_010 Hb_099157_010 Hb_000609_020--Hb_099157_010 Hb_000836_260 Hb_000836_260 Hb_000847_120--Hb_000836_260 Hb_000847_120--Hb_000645_250 Hb_000847_120--Hb_000000_200 Hb_000751_070 Hb_000751_070 Hb_000847_120--Hb_000751_070 Hb_000844_090 Hb_000844_090 Hb_001004_130--Hb_000844_090 Hb_001004_130--Hb_006573_250 Hb_079394_010 Hb_079394_010 Hb_001004_130--Hb_079394_010 Hb_001005_210 Hb_001005_210 Hb_001004_130--Hb_001005_210 Hb_001300_140 Hb_001300_140 Hb_001004_130--Hb_001300_140 Hb_000000_200--Hb_010334_050 Hb_000000_200--Hb_000645_250 Hb_000000_200--Hb_099157_010 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000645_250--Hb_000751_070 Hb_178703_010 Hb_178703_010 Hb_006573_250--Hb_178703_010 Hb_001597_110 Hb_001597_110 Hb_006573_250--Hb_001597_110 Hb_032223_020 Hb_032223_020 Hb_006573_250--Hb_032223_020 Hb_032631_080 Hb_032631_080 Hb_006573_250--Hb_032631_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0692095 19.6829 156.95 152.521 0.0173455 0.0513098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237041 0.0932317 0.289385 455.231 192.927

CAGE analysis