Hb_008387_010

Information

Type -
Description -
Location Contig8387: 3817-6150
Sequence    

Annotation

kegg
ID tcc:TCM_030975
description SMAD/FHA domain-containing protein isoform 1
nr
ID XP_007020949.1
description SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
swissprot
ID Q8W4D8
description FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1
trembl
ID A0A061FD98
description SMAD/FHA domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_030975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60028: 3751-23956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008387_010 0.0 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
2 Hb_000457_230 0.0659501797 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_002811_040 0.0675939851 - - 5'->3' exoribonuclease, putative [Ricinus communis]
4 Hb_000205_130 0.0681027137 - - calcium ion binding protein, putative [Ricinus communis]
5 Hb_002615_120 0.0705798648 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
6 Hb_017214_040 0.071364182 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
7 Hb_026234_010 0.0765095259 - - choline monooxygenase, putative [Ricinus communis]
8 Hb_000529_060 0.0791618696 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
9 Hb_098209_010 0.0805257173 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
10 Hb_001674_040 0.082927938 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
11 Hb_011972_020 0.0833526515 - - protein binding protein, putative [Ricinus communis]
12 Hb_000227_270 0.0845313889 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
13 Hb_032202_080 0.0861825746 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
14 Hb_000207_200 0.0875053662 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
15 Hb_001584_350 0.0887227751 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
16 Hb_008568_020 0.0887680537 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
17 Hb_000445_060 0.0891243705 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
18 Hb_007283_010 0.0895704813 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
19 Hb_023226_070 0.089793191 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005895_010 0.0908509577 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008387_010 Hb_008387_010 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_002811_040 Hb_002811_040 Hb_008387_010--Hb_002811_040 Hb_000205_130 Hb_000205_130 Hb_008387_010--Hb_000205_130 Hb_002615_120 Hb_002615_120 Hb_008387_010--Hb_002615_120 Hb_017214_040 Hb_017214_040 Hb_008387_010--Hb_017214_040 Hb_026234_010 Hb_026234_010 Hb_008387_010--Hb_026234_010 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_000003_400 Hb_000003_400 Hb_002811_040--Hb_000003_400 Hb_000529_060 Hb_000529_060 Hb_002811_040--Hb_000529_060 Hb_000445_060 Hb_000445_060 Hb_002811_040--Hb_000445_060 Hb_023226_070 Hb_023226_070 Hb_002811_040--Hb_023226_070 Hb_004724_370 Hb_004724_370 Hb_002811_040--Hb_004724_370 Hb_003912_040 Hb_003912_040 Hb_000205_130--Hb_003912_040 Hb_008568_020 Hb_008568_020 Hb_000205_130--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_000205_130--Hb_003096_060 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_002615_120--Hb_008568_020 Hb_002615_120--Hb_032202_080 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_000179_190 Hb_000179_190 Hb_017214_040--Hb_000179_190 Hb_017214_040--Hb_023226_070 Hb_017214_040--Hb_000445_060 Hb_000227_270 Hb_000227_270 Hb_017214_040--Hb_000227_270 Hb_000110_350 Hb_000110_350 Hb_017214_040--Hb_000110_350 Hb_016448_010 Hb_016448_010 Hb_026234_010--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_026234_010--Hb_000098_240 Hb_001519_040 Hb_001519_040 Hb_026234_010--Hb_001519_040 Hb_003506_030 Hb_003506_030 Hb_026234_010--Hb_003506_030 Hb_007413_040 Hb_007413_040 Hb_026234_010--Hb_007413_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4833 19.8788 27.5687 15.2945 10.6033 15.1861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12096 7.66 6.51955 10.3689 15.5517

CAGE analysis