Hb_008397_020

Information

Type -
Description -
Location Contig8397: 45917-48106
Sequence    

Annotation

kegg
ID csv:101213227
description uncharacterized LOC101213227
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008397_020 0.0 - - polyprotein [Oryza australiensis]
2 Hb_003735_010 0.0001383142 - - -
3 Hb_001719_030 0.0007111512 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_083377_010 0.0013657963 - - unnamed protein product [Vitis vinifera]
5 Hb_004918_040 0.0022669405 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005656_090 0.0164771086 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
7 Hb_010139_010 0.017460619 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
8 Hb_002621_020 0.0244505344 - - -
9 Hb_007658_020 0.0255551256 - - Beta-amyrin synthase [Glycine soja]
10 Hb_000000_220 0.0258833039 - - protein with unknown function [Ricinus communis]
11 Hb_000703_310 0.0278422077 - - -
12 Hb_007382_060 0.029465892 - - -
13 Hb_004195_050 0.0295058508 - - -
14 Hb_007441_030 0.030658166 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
15 Hb_000163_310 0.0358810559 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
16 Hb_151236_010 0.0379652036 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
17 Hb_002138_030 0.0415643245 - - -
18 Hb_010839_020 0.0439052264 - - -
19 Hb_006364_010 0.0451381868 - - -
20 Hb_005228_090 0.0457825436 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]

Gene co-expression network

sample Hb_008397_020 Hb_008397_020 Hb_003735_010 Hb_003735_010 Hb_008397_020--Hb_003735_010 Hb_001719_030 Hb_001719_030 Hb_008397_020--Hb_001719_030 Hb_083377_010 Hb_083377_010 Hb_008397_020--Hb_083377_010 Hb_004918_040 Hb_004918_040 Hb_008397_020--Hb_004918_040 Hb_005656_090 Hb_005656_090 Hb_008397_020--Hb_005656_090 Hb_010139_010 Hb_010139_010 Hb_008397_020--Hb_010139_010 Hb_003735_010--Hb_001719_030 Hb_003735_010--Hb_083377_010 Hb_003735_010--Hb_004918_040 Hb_003735_010--Hb_005656_090 Hb_003735_010--Hb_010139_010 Hb_001719_030--Hb_083377_010 Hb_001719_030--Hb_004918_040 Hb_001719_030--Hb_005656_090 Hb_001719_030--Hb_010139_010 Hb_083377_010--Hb_004918_040 Hb_083377_010--Hb_005656_090 Hb_083377_010--Hb_010139_010 Hb_004918_040--Hb_005656_090 Hb_004918_040--Hb_010139_010 Hb_005656_090--Hb_010139_010 Hb_002621_020 Hb_002621_020 Hb_005656_090--Hb_002621_020 Hb_000703_310 Hb_000703_310 Hb_005656_090--Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_005656_090--Hb_007441_030 Hb_010139_010--Hb_002621_020 Hb_010139_010--Hb_000703_310 Hb_010139_010--Hb_007441_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00888751 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0153296 0

CAGE analysis