Hb_008406_020

Information

Type -
Description -
Location Contig8406: 20953-24930
Sequence    

Annotation

kegg
ID rcu:RCOM_1173140
description tyrosine aminotransferase, putative (EC:2.6.1.5)
nr
ID XP_012088234.1
description PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
swissprot
ID Q67Y55
description Probable aminotransferase TAT1 OS=Arabidopsis thaliana GN=At4g28420 PE=2 SV=1
trembl
ID A0A067JX30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25751 PE=4 SV=1
Gene Ontology
ID GO:0004838
description probable aminotransferase tat2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60098: 20962-24717 , PASA_asmbl_60099: 21737-21972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_020 0.0 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
2 Hb_009581_040 0.0882268368 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
3 Hb_000907_120 0.0958992298 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
4 Hb_002276_100 0.0964139581 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
5 Hb_008226_120 0.1003099537 - - ATP binding protein, putative [Ricinus communis]
6 Hb_003430_020 0.1011724257 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
7 Hb_068332_010 0.1035871915 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_003376_200 0.1076426674 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_005000_200 0.1128381268 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
10 Hb_003052_120 0.1175271223 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
11 Hb_013914_020 0.1196259536 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
12 Hb_001148_040 0.1214289352 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_074312_020 0.1218536378 - - cytochrome P450, putative [Ricinus communis]
14 Hb_006364_020 0.1221235806 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
15 Hb_000836_390 0.1228306735 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_000586_100 0.1230131458 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000407_080 0.1236562236 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
18 Hb_012807_060 0.1244793969 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_134017_010 0.1246841583 - - kinase, putative [Ricinus communis]
20 Hb_001894_040 0.126864154 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008406_020 Hb_008406_020 Hb_009581_040 Hb_009581_040 Hb_008406_020--Hb_009581_040 Hb_000907_120 Hb_000907_120 Hb_008406_020--Hb_000907_120 Hb_002276_100 Hb_002276_100 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_003430_020 Hb_003430_020 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010 Hb_009581_040--Hb_003430_020 Hb_074312_020 Hb_074312_020 Hb_009581_040--Hb_074312_020 Hb_001862_060 Hb_001862_060 Hb_009581_040--Hb_001862_060 Hb_000255_020 Hb_000255_020 Hb_009581_040--Hb_000255_020 Hb_009581_040--Hb_002276_100 Hb_000152_250 Hb_000152_250 Hb_000907_120--Hb_000152_250 Hb_000521_210 Hb_000521_210 Hb_000907_120--Hb_000521_210 Hb_006020_010 Hb_006020_010 Hb_000907_120--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000907_120--Hb_006364_020 Hb_000111_190 Hb_000111_190 Hb_000907_120--Hb_000111_190 Hb_002276_100--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_000280_110 Hb_000280_110 Hb_002276_100--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_001894_040 Hb_001894_040 Hb_008226_120--Hb_001894_040 Hb_008226_120--Hb_038777_010 Hb_008226_120--Hb_001862_060 Hb_008226_120--Hb_009581_040 Hb_012807_060 Hb_012807_060 Hb_008226_120--Hb_012807_060 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_003430_020--Hb_012807_060 Hb_168068_010 Hb_168068_010 Hb_068332_010--Hb_168068_010 Hb_000120_070 Hb_000120_070 Hb_068332_010--Hb_000120_070 Hb_068332_010--Hb_002276_100 Hb_003376_200 Hb_003376_200 Hb_068332_010--Hb_003376_200 Hb_003556_070 Hb_003556_070 Hb_068332_010--Hb_003556_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.862951 62.7053 12.7762 30.4549 1.01524 1.427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.235359 0.0205753 0.0777347 46.575 7.0147

CAGE analysis