Hb_008406_130

Information

Type -
Description -
Location Contig8406: 88084-97107
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60114: 94652-96333 , PASA_asmbl_60116: 97714-99834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_130 0.0 - - -
2 Hb_003243_020 0.1361637023 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
3 Hb_099698_010 0.1430505161 - - -
4 Hb_045502_010 0.1655201079 - - prefoldin subunit 1 [Jatropha curcas]
5 Hb_000544_120 0.1657218501 - - PREDICTED: thymidylate kinase [Jatropha curcas]
6 Hb_000040_050 0.1676325035 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
7 Hb_031073_010 0.1683604228 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
8 Hb_006960_030 0.170879221 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
9 Hb_000038_150 0.1711476233 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
10 Hb_003673_020 0.1742502536 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
11 Hb_002518_300 0.1772094131 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
12 Hb_063409_020 0.1808085218 - - Calcium-binding protein, putative [Ricinus communis]
13 Hb_007757_100 0.1816802333 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
14 Hb_004376_030 0.183588318 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
15 Hb_035360_010 0.1843088875 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_114984_010 0.1860825007 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004920_060 0.1863901129 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
18 Hb_000256_210 0.1876519602 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
19 Hb_003580_040 0.1900802025 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
20 Hb_000199_080 0.1903731506 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008406_130 Hb_008406_130 Hb_003243_020 Hb_003243_020 Hb_008406_130--Hb_003243_020 Hb_099698_010 Hb_099698_010 Hb_008406_130--Hb_099698_010 Hb_045502_010 Hb_045502_010 Hb_008406_130--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_008406_130--Hb_000544_120 Hb_000040_050 Hb_000040_050 Hb_008406_130--Hb_000040_050 Hb_031073_010 Hb_031073_010 Hb_008406_130--Hb_031073_010 Hb_002518_300 Hb_002518_300 Hb_003243_020--Hb_002518_300 Hb_006882_010 Hb_006882_010 Hb_003243_020--Hb_006882_010 Hb_002159_030 Hb_002159_030 Hb_003243_020--Hb_002159_030 Hb_001901_080 Hb_001901_080 Hb_003243_020--Hb_001901_080 Hb_003243_020--Hb_099698_010 Hb_099698_010--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_099698_010--Hb_004712_110 Hb_007441_070 Hb_007441_070 Hb_099698_010--Hb_007441_070 Hb_000173_210 Hb_000173_210 Hb_099698_010--Hb_000173_210 Hb_000619_070 Hb_000619_070 Hb_045502_010--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003581_110 Hb_003581_110 Hb_045502_010--Hb_003581_110 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_000392_280 Hb_000392_280 Hb_045502_010--Hb_000392_280 Hb_006631_010 Hb_006631_010 Hb_000544_120--Hb_006631_010 Hb_000544_120--Hb_035360_010 Hb_000544_120--Hb_000619_070 Hb_002897_040 Hb_002897_040 Hb_000544_120--Hb_002897_040 Hb_000544_120--Hb_000173_210 Hb_000018_160 Hb_000018_160 Hb_000544_120--Hb_000018_160 Hb_030627_040 Hb_030627_040 Hb_000040_050--Hb_030627_040 Hb_000040_050--Hb_004712_110 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000261_520 Hb_000261_520 Hb_000040_050--Hb_000261_520 Hb_001534_070 Hb_001534_070 Hb_000040_050--Hb_001534_070 Hb_000161_100 Hb_000161_100 Hb_031073_010--Hb_000161_100 Hb_031073_010--Hb_000544_120 Hb_005228_120 Hb_005228_120 Hb_031073_010--Hb_005228_120 Hb_031073_010--Hb_002897_040 Hb_031073_010--Hb_004712_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19057 0.494098 1.28342 0.891016 6.62761 4.28393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191762 0.603394 0.168766 0.688297 0.500781

CAGE analysis