Hb_008406_160

Information

Type -
Description -
Location Contig8406: 110861-114900
Sequence    

Annotation

kegg
ID rcu:RCOM_1173510
description ADP,ATP carrier protein, putative
nr
ID XP_012088250.1
description PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
swissprot
ID O49447
description ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=AAC3 PE=2 SV=1
trembl
ID A0A067JJF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25763 PE=3 SV=1
Gene Ontology
ID GO:0005743
description carrier protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60122: 111102-114858
cDNA
(Sanger)
(ID:Location)		 017_P05.ab1: 111102-113708 , 018_P23.ab1: 111138-113588 , 024_G20.ab1: 111102-113694 , 032_N02.ab1: 111102-113709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_160 0.0 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
2 Hb_000258_410 0.0624080305 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
3 Hb_000808_040 0.0758900834 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
4 Hb_000997_060 0.0766393222 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
5 Hb_003453_020 0.077746753 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
6 Hb_015941_030 0.0780868994 - - unknown [Populus trichocarpa]
7 Hb_000322_050 0.0812045568 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
8 Hb_000265_150 0.0841469193 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
9 Hb_007441_340 0.0853986041 - - protein with unknown function [Ricinus communis]
10 Hb_001009_040 0.0860529499 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
11 Hb_004096_170 0.0865322336 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
12 Hb_000699_130 0.0879478889 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000012_090 0.088366173 - - 3'-5' exonuclease, putative [Ricinus communis]
14 Hb_003728_020 0.0916241952 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001014_010 0.0922257262 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
16 Hb_012305_070 0.092472195 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000169_010 0.0932490406 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_000645_150 0.0942052001 - - zinc finger protein, putative [Ricinus communis]
19 Hb_005527_050 0.0955038852 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
20 Hb_003464_110 0.0969849953 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008406_160 Hb_008406_160 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_003453_020 Hb_003453_020 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_000322_050 Hb_000322_050 Hb_008406_160--Hb_000322_050 Hb_000258_410--Hb_000997_060 Hb_000237_230 Hb_000237_230 Hb_000258_410--Hb_000237_230 Hb_005271_070 Hb_005271_070 Hb_000258_410--Hb_005271_070 Hb_011537_040 Hb_011537_040 Hb_000258_410--Hb_011537_040 Hb_000176_110 Hb_000176_110 Hb_000258_410--Hb_000176_110 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_000808_040--Hb_015941_030 Hb_086639_070 Hb_086639_070 Hb_000808_040--Hb_086639_070 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_002232_170 Hb_002232_170 Hb_000997_060--Hb_002232_170 Hb_000997_060--Hb_015941_030 Hb_123475_010 Hb_123475_010 Hb_000997_060--Hb_123475_010 Hb_000272_100 Hb_000272_100 Hb_000997_060--Hb_000272_100 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1053.68 433.571 262.383 302.714 1450.66 1243.45
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1301.63 946.2 402.599 400.717 187.793

CAGE analysis