Hb_008406_200

Information

Type transcription factor
Description TF Family: SNF2
Location Contig8406: 133098-138679
Sequence    

Annotation

kegg
ID rcu:RCOM_1173750
description hypothetical protein
nr
ID XP_002517890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I2H2
description Switch 2 OS=Arabidopsis thaliana GN=SWI2 PE=3 SV=1
trembl
ID B9RVX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1173750 PE=4 SV=1
Gene Ontology
ID GO:0016020
description switch 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60133: 133203-138786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_200 0.0 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
2 Hb_016172_020 0.0500050742 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
3 Hb_001409_020 0.0501089956 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
4 Hb_005653_090 0.056319586 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
5 Hb_000345_380 0.0586098561 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
6 Hb_000484_030 0.0604063393 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
7 Hb_000343_250 0.0606637497 - - PREDICTED: protein CASC3 [Jatropha curcas]
8 Hb_000327_270 0.0615602831 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
9 Hb_000025_410 0.0625326559 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
10 Hb_000603_280 0.0634861369 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
11 Hb_001248_060 0.0667245476 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005779_080 0.0673674179 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
13 Hb_010618_010 0.0680333333 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_000173_490 0.0687681247 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
15 Hb_000590_050 0.0705622804 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
16 Hb_011037_030 0.0711200311 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
17 Hb_000029_050 0.0711241839 - - expressed protein, putative [Ricinus communis]
18 Hb_014361_070 0.0728134144 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_000329_710 0.0728474203 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_167498_010 0.0732040183 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008406_200 Hb_008406_200 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_001409_020 Hb_001409_020 Hb_008406_200--Hb_001409_020 Hb_005653_090 Hb_005653_090 Hb_008406_200--Hb_005653_090 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_008643_210 Hb_008643_210 Hb_016172_020--Hb_008643_210 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_001409_020--Hb_010618_010 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_000331_680 Hb_000331_680 Hb_005653_090--Hb_000331_680 Hb_003464_090 Hb_003464_090 Hb_005653_090--Hb_003464_090 Hb_003849_110 Hb_003849_110 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280 Hb_105328_020 Hb_105328_020 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_000030_190 Hb_000030_190 Hb_000345_380--Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000345_380--Hb_000789_310 Hb_000345_380--Hb_001409_020 Hb_008453_140 Hb_008453_140 Hb_000484_030--Hb_008453_140 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_007416_340 Hb_007416_340 Hb_000484_030--Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_000346_060 Hb_000346_060 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3122 11.1421 8.714 8.3236 8.87173 13.8457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.71329 9.46253 9.63636 9.08111 9.78212

CAGE analysis