Hb_008412_040

Information

Type -
Description -
Location Contig8412: 28011-44399
Sequence    

Annotation

kegg
ID cam:101506028
description uncharacterized LOC101506028
nr
ID CBI24830.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P09848
description Lactase-phlorizin hydrolase OS=Homo sapiens GN=LCT PE=1 SV=3
trembl
ID A0A0D9W664
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0004553
description lactase-phlorizin hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60149: 36132-42722 , PASA_asmbl_60150: 42451-43066 , PASA_asmbl_60151: 41011-42430 , PASA_asmbl_60153: 43761-44441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008412_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_127629_010 0.062641214 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
3 Hb_002259_090 0.0867661614 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
4 Hb_000002_500 0.0881822523 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
5 Hb_001942_010 0.0930689852 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
6 Hb_001115_070 0.0941559519 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
7 Hb_008847_050 0.0950503261 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002852_010 0.0960740848 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_002007_220 0.100445743 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_002842_010 0.1022534515 - - sulfate transporter, putative [Ricinus communis]
11 Hb_002182_010 0.1032867939 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
12 Hb_000046_120 0.1033747856 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
13 Hb_033363_040 0.1048118325 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
14 Hb_002284_160 0.104882934 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_012395_090 0.105025273 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
16 Hb_018591_020 0.1057579181 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_000042_280 0.1068055736 - - chlorophyll A/B binding protein, putative [Ricinus communis]
18 Hb_102179_010 0.1097433465 - - protein binding protein, putative [Ricinus communis]
19 Hb_003025_160 0.1103067669 - - Protein HVA22, putative [Ricinus communis]
20 Hb_001158_130 0.1109984077 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_008412_040 Hb_008412_040 Hb_127629_010 Hb_127629_010 Hb_008412_040--Hb_127629_010 Hb_002259_090 Hb_002259_090 Hb_008412_040--Hb_002259_090 Hb_000002_500 Hb_000002_500 Hb_008412_040--Hb_000002_500 Hb_001942_010 Hb_001942_010 Hb_008412_040--Hb_001942_010 Hb_001115_070 Hb_001115_070 Hb_008412_040--Hb_001115_070 Hb_008847_050 Hb_008847_050 Hb_008412_040--Hb_008847_050 Hb_127629_010--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_127629_010--Hb_002284_160 Hb_004117_380 Hb_004117_380 Hb_127629_010--Hb_004117_380 Hb_127629_010--Hb_000002_500 Hb_010136_010 Hb_010136_010 Hb_127629_010--Hb_010136_010 Hb_002259_090--Hb_008847_050 Hb_001007_070 Hb_001007_070 Hb_002259_090--Hb_001007_070 Hb_003025_160 Hb_003025_160 Hb_002259_090--Hb_003025_160 Hb_001999_230 Hb_001999_230 Hb_002259_090--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_002259_090--Hb_005054_120 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_018591_020 Hb_018591_020 Hb_000002_500--Hb_018591_020 Hb_000002_500--Hb_001115_070 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_001942_010--Hb_000046_120 Hb_012395_090 Hb_012395_090 Hb_001942_010--Hb_012395_090 Hb_001942_010--Hb_003435_030 Hb_011013_040 Hb_011013_040 Hb_001942_010--Hb_011013_040 Hb_002702_010 Hb_002702_010 Hb_001942_010--Hb_002702_010 Hb_001942_010--Hb_010136_010 Hb_001115_070--Hb_002284_160 Hb_001115_070--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_001115_070--Hb_004017_030 Hb_001115_070--Hb_018591_020 Hb_009193_070 Hb_009193_070 Hb_008847_050--Hb_009193_070 Hb_001141_100 Hb_001141_100 Hb_008847_050--Hb_001141_100 Hb_008847_050--Hb_001277_130 Hb_028491_010 Hb_028491_010 Hb_008847_050--Hb_028491_010 Hb_008847_050--Hb_003025_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0342162 1.3332 5.5174 4.27946 0.0251213 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.08036

CAGE analysis