Hb_008418_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig8418: 14321-16187
Sequence    

Annotation

kegg
ID rcu:RCOM_0481980
description DNA binding protein, putative
nr
ID XP_012068085.1
description PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
swissprot
ID Q9LSL1
description Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1
trembl
ID A0A067KZB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15934 PE=4 SV=1
Gene Ontology
ID GO:0016491
description transcription factor bhlh93-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60156: 14420-14972 , PASA_asmbl_60157: 15496-15983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008418_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
2 Hb_164283_010 0.0634651511 - - hypothetical protein RCOM_0725500 [Ricinus communis]
3 Hb_018591_010 0.0648796824 - - kinase, putative [Ricinus communis]
4 Hb_006637_040 0.0787256454 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_000723_240 0.08578834 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
6 Hb_001922_010 0.0890773315 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
7 Hb_003768_100 0.09194352 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
8 Hb_007017_120 0.0977734646 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
9 Hb_011145_020 0.1067187418 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
10 Hb_001545_270 0.109139341 - - laccase, putative [Ricinus communis]
11 Hb_012368_080 0.1101579218 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
12 Hb_002749_070 0.1108653649 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
13 Hb_003893_100 0.1133764668 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
14 Hb_098030_010 0.1144973377 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
15 Hb_000797_030 0.1152723212 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
16 Hb_003097_200 0.116862079 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000589_100 0.1170292897 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_004544_070 0.1184569142 - - unnamed protein product [Vitis vinifera]
19 Hb_003160_050 0.1219516711 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
20 Hb_002809_020 0.1230902352 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_008418_010 Hb_008418_010 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_008418_010--Hb_018591_010 Hb_006637_040 Hb_006637_040 Hb_008418_010--Hb_006637_040 Hb_000723_240 Hb_000723_240 Hb_008418_010--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_008418_010--Hb_001922_010 Hb_003768_100 Hb_003768_100 Hb_008418_010--Hb_003768_100 Hb_164283_010--Hb_018591_010 Hb_004544_070 Hb_004544_070 Hb_164283_010--Hb_004544_070 Hb_164283_010--Hb_006637_040 Hb_002749_070 Hb_002749_070 Hb_164283_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_164283_010--Hb_011145_020 Hb_018591_010--Hb_006637_040 Hb_018591_010--Hb_004544_070 Hb_018591_010--Hb_002749_070 Hb_018591_010--Hb_011145_020 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_000797_030 Hb_000797_030 Hb_006637_040--Hb_000797_030 Hb_012368_080 Hb_012368_080 Hb_006637_040--Hb_012368_080 Hb_003160_050 Hb_003160_050 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_001545_270 Hb_001545_270 Hb_001922_010--Hb_001545_270 Hb_032631_080 Hb_032631_080 Hb_001922_010--Hb_032631_080 Hb_001691_060 Hb_001691_060 Hb_001922_010--Hb_001691_060 Hb_001922_010--Hb_011145_020 Hb_003768_100--Hb_000723_240 Hb_003768_100--Hb_003160_050 Hb_003768_100--Hb_007313_010 Hb_003226_050 Hb_003226_050 Hb_003768_100--Hb_003226_050 Hb_007017_120 Hb_007017_120 Hb_003768_100--Hb_007017_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.846883 2.65327 4.77721 0.0126929 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 15.7915 1.11838

CAGE analysis