Hb_008424_010

Information

Type -
Description -
Location Contig8424: 7741-13669
Sequence    

Annotation

kegg
ID tcc:TCM_028292
description DNA/RNA polymerases superfamily protein
nr
ID XP_007023888.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P27401
description Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2
trembl
ID A0A061G9E7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008424_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000016_010 0.0012948742 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_005432_050 0.0337954936 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
4 Hb_001066_020 0.0564143907 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
5 Hb_000336_300 0.0575838323 - - -
6 Hb_133862_010 0.0722285878 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
7 Hb_135941_010 0.0755824245 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
8 Hb_012264_040 0.0872997163 - - -
9 Hb_001081_040 0.0980456871 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
10 Hb_000994_010 0.1362459925 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
11 Hb_003637_030 0.1735647408 - - -
12 Hb_086484_010 0.1938582101 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
13 Hb_102355_010 0.1979782928 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
14 Hb_002708_010 0.218558982 - - -
15 Hb_185830_100 0.2202014383 - - -
16 Hb_001863_210 0.2216830971 - - -
17 Hb_006387_010 0.2300598408 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
18 Hb_049827_010 0.2335962748 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
19 Hb_041177_010 0.2359435082 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
20 Hb_003392_010 0.2366055431 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_008424_010 Hb_008424_010 Hb_000016_010 Hb_000016_010 Hb_008424_010--Hb_000016_010 Hb_005432_050 Hb_005432_050 Hb_008424_010--Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_008424_010--Hb_001066_020 Hb_000336_300 Hb_000336_300 Hb_008424_010--Hb_000336_300 Hb_133862_010 Hb_133862_010 Hb_008424_010--Hb_133862_010 Hb_135941_010 Hb_135941_010 Hb_008424_010--Hb_135941_010 Hb_000016_010--Hb_005432_050 Hb_000016_010--Hb_000336_300 Hb_000016_010--Hb_001066_020 Hb_000016_010--Hb_133862_010 Hb_000016_010--Hb_135941_010 Hb_005432_050--Hb_001066_020 Hb_005432_050--Hb_133862_010 Hb_005432_050--Hb_135941_010 Hb_012264_040 Hb_012264_040 Hb_005432_050--Hb_012264_040 Hb_001066_020--Hb_133862_010 Hb_001066_020--Hb_135941_010 Hb_001066_020--Hb_012264_040 Hb_001081_040 Hb_001081_040 Hb_000336_300--Hb_001081_040 Hb_000994_010 Hb_000994_010 Hb_000336_300--Hb_000994_010 Hb_000336_300--Hb_005432_050 Hb_000336_300--Hb_001066_020 Hb_133862_010--Hb_135941_010 Hb_133862_010--Hb_012264_040 Hb_135941_010--Hb_012264_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0115862 0 0 0.0043964 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis