Hb_008447_030

Information

Type -
Description -
Location Contig8447: 28670-29115
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60191: 28648-36336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008447_030 0.0 - - -
2 Hb_000656_090 0.1134785718 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
3 Hb_026745_020 0.1359586646 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
4 Hb_006274_040 0.1417290341 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
5 Hb_002200_040 0.1417683882 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
6 Hb_000160_160 0.1432604126 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
7 Hb_008447_040 0.1471193372 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_004709_020 0.1524942027 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
9 Hb_002200_050 0.1529344361 - - unknown [Lotus japonicus]
10 Hb_012627_020 0.1535784491 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
11 Hb_004060_030 0.1570916168 - - PREDICTED: primase homolog protein [Jatropha curcas]
12 Hb_004303_040 0.1621128442 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
13 Hb_127552_060 0.1621370327 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
14 Hb_142328_010 0.1661936881 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
15 Hb_000329_560 0.1671464459 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002079_050 0.169045164 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
17 Hb_005679_070 0.1699252103 - - hypothetical protein M569_07741, partial [Genlisea aurea]
18 Hb_003688_110 0.1703091061 - - -
19 Hb_002414_060 0.1704387026 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
20 Hb_004448_090 0.1767499114 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_008447_030 Hb_008447_030 Hb_000656_090 Hb_000656_090 Hb_008447_030--Hb_000656_090 Hb_026745_020 Hb_026745_020 Hb_008447_030--Hb_026745_020 Hb_006274_040 Hb_006274_040 Hb_008447_030--Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_008447_030--Hb_002200_040 Hb_000160_160 Hb_000160_160 Hb_008447_030--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_008447_030--Hb_008447_040 Hb_012627_020 Hb_012627_020 Hb_000656_090--Hb_012627_020 Hb_000656_090--Hb_000160_160 Hb_003030_030 Hb_003030_030 Hb_000656_090--Hb_003030_030 Hb_000656_090--Hb_008447_040 Hb_000656_090--Hb_026745_020 Hb_005701_060 Hb_005701_060 Hb_026745_020--Hb_005701_060 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_004303_040 Hb_004303_040 Hb_026745_020--Hb_004303_040 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100 Hb_006274_040--Hb_002200_040 Hb_142328_010 Hb_142328_010 Hb_006274_040--Hb_142328_010 Hb_002079_050 Hb_002079_050 Hb_006274_040--Hb_002079_050 Hb_000586_030 Hb_000586_030 Hb_006274_040--Hb_000586_030 Hb_000168_010 Hb_000168_010 Hb_006274_040--Hb_000168_010 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_002200_040--Hb_004303_040 Hb_002200_050 Hb_002200_050 Hb_000160_160--Hb_002200_050 Hb_000160_160--Hb_012627_020 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_025190_010 Hb_025190_010 Hb_000160_160--Hb_025190_010 Hb_127552_060 Hb_127552_060 Hb_008447_040--Hb_127552_060 Hb_004448_090 Hb_004448_090 Hb_008447_040--Hb_004448_090 Hb_007023_030 Hb_007023_030 Hb_008447_040--Hb_007023_030 Hb_000429_150 Hb_000429_150 Hb_008447_040--Hb_000429_150 Hb_000236_310 Hb_000236_310 Hb_008447_040--Hb_000236_310 Hb_002414_060 Hb_002414_060 Hb_008447_040--Hb_002414_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1227 10.3776 8.3407 54.6108 9.64573 82.6767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.5808 17.0479 17.0894 29.2265 48.1905

CAGE analysis