Hb_008453_020

Information

Type -
Description -
Location Contig8453: 7179-7658
Sequence    

Annotation

kegg
ID rcu:RCOM_1599370
description ring finger protein, putative
nr
ID XP_012073730.1
description PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
swissprot
ID Q8L9W3
description E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23 PE=1 SV=2
trembl
ID A0A067KYE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08170 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase atl23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
2 Hb_000958_010 0.1084781964 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001198_090 0.1245983619 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
4 Hb_005015_010 0.1383218785 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
5 Hb_030620_010 0.1395187195 - - -
6 Hb_000117_040 0.141826429 - - 30S ribosomal protein S6A [Hevea brasiliensis]
7 Hb_000733_060 0.1433981093 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
8 Hb_027556_010 0.1442717529 - - -
9 Hb_000729_060 0.1447559489 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004813_010 0.1451991739 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_001158_030 0.1455173227 - - -
12 Hb_000481_010 0.1465259201 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
13 Hb_004032_240 0.1474216989 - - electron transporter, putative [Ricinus communis]
14 Hb_011609_190 0.1491539573 - - 14-3-3 protein 2 [Hevea brasiliensis]
15 Hb_001514_200 0.1493582151 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
16 Hb_000183_070 0.1498542599 - - -
17 Hb_002078_040 0.1501573306 - - protein with unknown function [Ricinus communis]
18 Hb_002783_230 0.1502083554 - - neutral/alkaline invertase [Manihot esculenta]
19 Hb_015456_020 0.1506912228 - - -
20 Hb_009662_030 0.1538491281 - - hypothetical protein JCGZ_15748 [Jatropha curcas]

Gene co-expression network

sample Hb_008453_020 Hb_008453_020 Hb_000958_010 Hb_000958_010 Hb_008453_020--Hb_000958_010 Hb_001198_090 Hb_001198_090 Hb_008453_020--Hb_001198_090 Hb_005015_010 Hb_005015_010 Hb_008453_020--Hb_005015_010 Hb_030620_010 Hb_030620_010 Hb_008453_020--Hb_030620_010 Hb_000117_040 Hb_000117_040 Hb_008453_020--Hb_000117_040 Hb_000733_060 Hb_000733_060 Hb_008453_020--Hb_000733_060 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_004032_240 Hb_004032_240 Hb_000958_010--Hb_004032_240 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_002200_110 Hb_002200_110 Hb_000958_010--Hb_002200_110 Hb_010931_110 Hb_010931_110 Hb_001198_090--Hb_010931_110 Hb_005529_010 Hb_005529_010 Hb_001198_090--Hb_005529_010 Hb_002276_190 Hb_002276_190 Hb_001198_090--Hb_002276_190 Hb_130177_010 Hb_130177_010 Hb_001198_090--Hb_130177_010 Hb_001427_170 Hb_001427_170 Hb_001198_090--Hb_001427_170 Hb_000188_190 Hb_000188_190 Hb_005015_010--Hb_000188_190 Hb_004096_170 Hb_004096_170 Hb_005015_010--Hb_004096_170 Hb_000183_070 Hb_000183_070 Hb_005015_010--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_005015_010--Hb_005714_040 Hb_009801_010 Hb_009801_010 Hb_005015_010--Hb_009801_010 Hb_004374_010 Hb_004374_010 Hb_005015_010--Hb_004374_010 Hb_004223_230 Hb_004223_230 Hb_030620_010--Hb_004223_230 Hb_102864_010 Hb_102864_010 Hb_030620_010--Hb_102864_010 Hb_000329_690 Hb_000329_690 Hb_030620_010--Hb_000329_690 Hb_030620_010--Hb_000117_040 Hb_006452_060 Hb_006452_060 Hb_030620_010--Hb_006452_060 Hb_030620_010--Hb_002200_110 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_022256_040 Hb_022256_040 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.798 22.2926 3.25126 19.2815 189.601 61.6795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.799 88.8037 61.7777 19.6403 5.01513

CAGE analysis