Hb_008453_030

Information

Type -
Description -
Location Contig8453: 15520-33083
Sequence    

Annotation

kegg
ID tcc:TCM_034282
description Thioredoxin superfamily protein
nr
ID XP_007017887.1
description Thioredoxin superfamily protein [Theobroma cacao]
swissprot
ID Q99JH1
description Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1
trembl
ID A0A061FEH2
description Thioredoxin superfamily protein OS=Theobroma cacao GN=TCM_034282 PE=4 SV=1
Gene Ontology
ID GO:0003676
description thioredoxin superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60201: 15325-18100 , PASA_asmbl_60202: 23012-24798 , PASA_asmbl_60203: 23013-26489 , PASA_asmbl_60205: 27418-30017 , PASA_asmbl_60206: 27991-28425
cDNA
(Sanger)
(ID:Location)		 009_N03.ab1: 15338-17546 , 046_H17.ab1: 15338-17569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_030 0.0 - - Thioredoxin superfamily protein [Theobroma cacao]
2 Hb_004934_100 0.0447512339 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000421_220 0.0626866211 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
4 Hb_000107_160 0.0663618784 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
5 Hb_000061_210 0.0667997175 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
6 Hb_000373_070 0.0691543141 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
7 Hb_000081_160 0.0693834092 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
8 Hb_002183_060 0.0698543733 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
9 Hb_156279_020 0.0711798298 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
10 Hb_002078_350 0.0712227547 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
11 Hb_000053_020 0.0713730513 - - F-box and wd40 domain protein, putative [Ricinus communis]
12 Hb_000684_470 0.0715534806 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
13 Hb_003697_040 0.071569379 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
14 Hb_003605_090 0.0722772295 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
15 Hb_000599_250 0.0731172043 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
16 Hb_003151_040 0.0737118209 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
17 Hb_001489_090 0.0738207598 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
18 Hb_000696_330 0.0750664249 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
19 Hb_000477_060 0.0760674079 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_001902_140 0.0766620078 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008453_030 Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_015934_070 Hb_015934_070 Hb_000421_220--Hb_015934_070 Hb_012423_030 Hb_012423_030 Hb_000107_160--Hb_012423_030 Hb_012675_050 Hb_012675_050 Hb_000107_160--Hb_012675_050 Hb_004143_150 Hb_004143_150 Hb_000107_160--Hb_004143_150 Hb_002676_090 Hb_002676_090 Hb_000107_160--Hb_002676_090 Hb_004324_270 Hb_004324_270 Hb_000107_160--Hb_004324_270 Hb_103118_010 Hb_103118_010 Hb_000061_210--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_000061_210--Hb_002408_020 Hb_000061_210--Hb_012675_050 Hb_000061_210--Hb_000421_220 Hb_001049_110 Hb_001049_110 Hb_000061_210--Hb_001049_110 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_001252_130 Hb_001252_130 Hb_000081_160--Hb_001252_130 Hb_000081_160--Hb_000215_110 Hb_002641_060 Hb_002641_060 Hb_000081_160--Hb_002641_060 Hb_001318_280 Hb_001318_280 Hb_000081_160--Hb_001318_280 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_001599_040 Hb_001599_040 Hb_000081_160--Hb_001599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2402 12.2753 12.9043 17.9991 15.0709 17.4026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7431 31.1161 21.4352 16.2638 20.6415

CAGE analysis