Hb_008453_040

Information

Type -
Description -
Location Contig8453: 33672-34631
Sequence    

Annotation

kegg
ID rcu:RCOM_1599330
description Alpha-expansin 11 precursor, putative
nr
ID XP_012073733.1
description PREDICTED: expansin-A11 [Jatropha curcas]
swissprot
ID Q9LNU3
description Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1
trembl
ID A0A067KL76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08173 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60207: 33629-34076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_040 0.0 - - PREDICTED: expansin-A11 [Jatropha curcas]
2 Hb_087388_010 0.0863130391 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
3 Hb_000347_520 0.232660699 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
4 Hb_002986_040 0.2348080422 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
5 Hb_010866_020 0.2365445199 - - unnamed protein product [Vitis vinifera]
6 Hb_180924_010 0.248692818 - - CPI-4 [Morus alba var. atropurpurea]
7 Hb_004032_340 0.2512510916 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
8 Hb_005870_010 0.2554750968 - - -
9 Hb_000027_280 0.2574436432 - - PREDICTED: uncharacterized protein LOC105642051 [Jatropha curcas]
10 Hb_007213_020 0.2783070283 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
11 Hb_002387_140 0.2798408135 - - PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]
12 Hb_000170_180 0.2874990992 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
13 Hb_000422_040 0.2928722019 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
14 Hb_001410_030 0.2962396986 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
15 Hb_000170_170 0.3003945188 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
16 Hb_002855_020 0.3093405517 - - -
17 Hb_004598_020 0.3094190443 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
18 Hb_180864_010 0.309428209 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
19 Hb_000531_010 0.311856125 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
20 Hb_059502_010 0.3120229935 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_008453_040 Hb_008453_040 Hb_087388_010 Hb_087388_010 Hb_008453_040--Hb_087388_010 Hb_000347_520 Hb_000347_520 Hb_008453_040--Hb_000347_520 Hb_002986_040 Hb_002986_040 Hb_008453_040--Hb_002986_040 Hb_010866_020 Hb_010866_020 Hb_008453_040--Hb_010866_020 Hb_180924_010 Hb_180924_010 Hb_008453_040--Hb_180924_010 Hb_004032_340 Hb_004032_340 Hb_008453_040--Hb_004032_340 Hb_087388_010--Hb_000347_520 Hb_087388_010--Hb_010866_020 Hb_005870_010 Hb_005870_010 Hb_087388_010--Hb_005870_010 Hb_000170_180 Hb_000170_180 Hb_087388_010--Hb_000170_180 Hb_087388_010--Hb_004032_340 Hb_000347_520--Hb_010866_020 Hb_006469_110 Hb_006469_110 Hb_000347_520--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_000347_520--Hb_003333_070 Hb_000188_080 Hb_000188_080 Hb_000347_520--Hb_000188_080 Hb_000367_110 Hb_000367_110 Hb_000347_520--Hb_000367_110 Hb_002309_030 Hb_002309_030 Hb_000347_520--Hb_002309_030 Hb_002986_040--Hb_180924_010 Hb_007594_050 Hb_007594_050 Hb_002986_040--Hb_007594_050 Hb_000556_130 Hb_000556_130 Hb_002986_040--Hb_000556_130 Hb_001410_030 Hb_001410_030 Hb_002986_040--Hb_001410_030 Hb_001329_010 Hb_001329_010 Hb_002986_040--Hb_001329_010 Hb_010866_020--Hb_005870_010 Hb_004308_010 Hb_004308_010 Hb_010866_020--Hb_004308_010 Hb_010866_020--Hb_006469_110 Hb_000170_170 Hb_000170_170 Hb_010866_020--Hb_000170_170 Hb_001199_120 Hb_001199_120 Hb_180924_010--Hb_001199_120 Hb_028621_030 Hb_028621_030 Hb_180924_010--Hb_028621_030 Hb_000009_370 Hb_000009_370 Hb_180924_010--Hb_000009_370 Hb_022958_020 Hb_022958_020 Hb_180924_010--Hb_022958_020 Hb_006816_240 Hb_006816_240 Hb_004032_340--Hb_006816_240 Hb_005116_090 Hb_005116_090 Hb_004032_340--Hb_005116_090 Hb_003001_050 Hb_003001_050 Hb_004032_340--Hb_003001_050 Hb_000103_330 Hb_000103_330 Hb_004032_340--Hb_000103_330 Hb_000003_200 Hb_000003_200 Hb_004032_340--Hb_000003_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.116036 0.192336 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0708964 0 0 0.0225924 0

CAGE analysis