Hb_008453_060

Information

Type -
Description -
Location Contig8453: 42271-43559
Sequence    

Annotation

kegg
ID rcu:RCOM_1599200
description hypothetical protein
nr
ID XP_002510585.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DYE5
description UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2
trembl
ID B9R8E2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1599200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000556_080 0.1150548958 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
3 Hb_001439_120 0.1165667119 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003893_170 0.1215534831 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
5 Hb_023226_060 0.1296143137 - - unnamed protein product [Vitis vinifera]
6 Hb_010174_130 0.130108525 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
7 Hb_005918_040 0.1309945235 - - hypothetical protein POPTR_0003s04560g [Populus trichocarpa]
8 Hb_002007_310 0.131812465 - - cyclin family protein [Populus trichocarpa]
9 Hb_001001_160 0.1345777799 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
10 Hb_000230_110 0.1406006043 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
11 Hb_000733_060 0.1424126137 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
12 Hb_000001_020 0.1426547204 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
13 Hb_000025_200 0.1455349046 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
14 Hb_003404_030 0.1495356283 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_001205_090 0.1515565252 - - PREDICTED: random slug protein 5 [Jatropha curcas]
16 Hb_002716_150 0.1517450445 - - starch synthase isoform I [Manihot esculenta]
17 Hb_017434_090 0.1517533341 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000589_270 0.1519030502 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
19 Hb_007919_050 0.1525688506 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
20 Hb_000392_070 0.1534222479 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_008453_060 Hb_008453_060 Hb_000556_080 Hb_000556_080 Hb_008453_060--Hb_000556_080 Hb_001439_120 Hb_001439_120 Hb_008453_060--Hb_001439_120 Hb_003893_170 Hb_003893_170 Hb_008453_060--Hb_003893_170 Hb_023226_060 Hb_023226_060 Hb_008453_060--Hb_023226_060 Hb_010174_130 Hb_010174_130 Hb_008453_060--Hb_010174_130 Hb_005918_040 Hb_005918_040 Hb_008453_060--Hb_005918_040 Hb_182026_020 Hb_182026_020 Hb_000556_080--Hb_182026_020 Hb_001135_160 Hb_001135_160 Hb_000556_080--Hb_001135_160 Hb_000556_080--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_010638_020 Hb_010638_020 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010 Hb_007919_050 Hb_007919_050 Hb_001439_120--Hb_007919_050 Hb_000029_030 Hb_000029_030 Hb_001439_120--Hb_000029_030 Hb_001439_120--Hb_010638_020 Hb_001439_120--Hb_182026_020 Hb_021068_050 Hb_021068_050 Hb_001439_120--Hb_021068_050 Hb_003751_110 Hb_003751_110 Hb_003893_170--Hb_003751_110 Hb_004032_240 Hb_004032_240 Hb_003893_170--Hb_004032_240 Hb_003893_170--Hb_001439_120 Hb_000733_060 Hb_000733_060 Hb_003893_170--Hb_000733_060 Hb_008453_020 Hb_008453_020 Hb_003893_170--Hb_008453_020 Hb_023226_060--Hb_000733_060 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_023226_060--Hb_005288_160 Hb_000768_030 Hb_000768_030 Hb_023226_060--Hb_000768_030 Hb_022256_040 Hb_022256_040 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_002498_100 Hb_002498_100 Hb_005918_040--Hb_002498_100 Hb_010402_010 Hb_010402_010 Hb_005918_040--Hb_010402_010 Hb_005918_040--Hb_010174_130 Hb_005918_040--Hb_000029_030 Hb_010174_120 Hb_010174_120 Hb_005918_040--Hb_010174_120 Hb_002182_040 Hb_002182_040 Hb_005918_040--Hb_002182_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30521 0.291922 0.105324 0.986992 3.16955 1.52315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13483 1.06236 1.77939 0.302364 0.494753

CAGE analysis