Hb_008453_080

Information

Type -
Description -
Location Contig8453: 56361-58147
Sequence    

Annotation

kegg
ID rcu:RCOM_1599170
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_012073740.1
description PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X2 [Jatropha curcas]
swissprot
ID Q7XWU3
description Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2
trembl
ID A0A067KX83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08176 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable cinnamyl alcohol dehydrogenase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60214: 56332-58072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_080 0.0 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X2 [Jatropha curcas]
2 Hb_002641_050 0.1588924273 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
3 Hb_000165_070 0.1604271767 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
4 Hb_110558_010 0.1623209427 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
5 Hb_080147_020 0.1644203472 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
6 Hb_068492_010 0.1691488722 - - -
7 Hb_000529_040 0.1738530453 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
8 Hb_000008_430 0.1766989211 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
9 Hb_014361_170 0.1778432344 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
10 Hb_002411_160 0.1798016352 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
11 Hb_086639_050 0.1801962007 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_025236_020 0.184054026 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
13 Hb_004032_090 0.1846448997 - - PREDICTED: protein AIG1 [Jatropha curcas]
14 Hb_029622_020 0.185218176 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001318_150 0.1852866207 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
16 Hb_000111_390 0.1891930847 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
17 Hb_001776_010 0.1899336315 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
18 Hb_000836_610 0.1903789034 - - stem-specific protein TSJT1-like [Jatropha curcas]
19 Hb_005649_010 0.1906208309 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_000001_010 0.1913912085 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]

Gene co-expression network

sample Hb_008453_080 Hb_008453_080 Hb_002641_050 Hb_002641_050 Hb_008453_080--Hb_002641_050 Hb_000165_070 Hb_000165_070 Hb_008453_080--Hb_000165_070 Hb_110558_010 Hb_110558_010 Hb_008453_080--Hb_110558_010 Hb_080147_020 Hb_080147_020 Hb_008453_080--Hb_080147_020 Hb_068492_010 Hb_068492_010 Hb_008453_080--Hb_068492_010 Hb_000529_040 Hb_000529_040 Hb_008453_080--Hb_000529_040 Hb_001318_110 Hb_001318_110 Hb_002641_050--Hb_001318_110 Hb_004667_040 Hb_004667_040 Hb_002641_050--Hb_004667_040 Hb_025236_020 Hb_025236_020 Hb_002641_050--Hb_025236_020 Hb_013938_010 Hb_013938_010 Hb_002641_050--Hb_013938_010 Hb_002343_020 Hb_002343_020 Hb_002641_050--Hb_002343_020 Hb_184008_010 Hb_184008_010 Hb_002641_050--Hb_184008_010 Hb_007575_030 Hb_007575_030 Hb_000165_070--Hb_007575_030 Hb_001240_050 Hb_001240_050 Hb_000165_070--Hb_001240_050 Hb_000760_080 Hb_000760_080 Hb_000165_070--Hb_000760_080 Hb_000737_010 Hb_000737_010 Hb_000165_070--Hb_000737_010 Hb_004096_220 Hb_004096_220 Hb_000165_070--Hb_004096_220 Hb_000438_010 Hb_000438_010 Hb_000165_070--Hb_000438_010 Hb_012366_050 Hb_012366_050 Hb_110558_010--Hb_012366_050 Hb_001123_190 Hb_001123_190 Hb_110558_010--Hb_001123_190 Hb_003226_090 Hb_003226_090 Hb_110558_010--Hb_003226_090 Hb_005504_030 Hb_005504_030 Hb_110558_010--Hb_005504_030 Hb_054865_050 Hb_054865_050 Hb_110558_010--Hb_054865_050 Hb_004032_090 Hb_004032_090 Hb_110558_010--Hb_004032_090 Hb_000567_090 Hb_000567_090 Hb_080147_020--Hb_000567_090 Hb_002411_160 Hb_002411_160 Hb_080147_020--Hb_002411_160 Hb_086639_050 Hb_086639_050 Hb_080147_020--Hb_086639_050 Hb_000098_150 Hb_000098_150 Hb_080147_020--Hb_000098_150 Hb_001221_580 Hb_001221_580 Hb_080147_020--Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_080147_020--Hb_004108_210 Hb_029622_020 Hb_029622_020 Hb_068492_010--Hb_029622_020 Hb_068492_010--Hb_002641_050 Hb_000051_030 Hb_000051_030 Hb_068492_010--Hb_000051_030 Hb_000836_610 Hb_000836_610 Hb_068492_010--Hb_000836_610 Hb_019863_030 Hb_019863_030 Hb_068492_010--Hb_019863_030 Hb_000529_040--Hb_086639_050 Hb_000181_270 Hb_000181_270 Hb_000529_040--Hb_000181_270 Hb_000529_040--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_000529_040--Hb_001117_080 Hb_002518_200 Hb_002518_200 Hb_000529_040--Hb_002518_200 Hb_000529_040--Hb_000567_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63485 16.7706 22.1904 7.81415 0.403815 1.29841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56815 0.912241 0.103442 13.9461 4.72074

CAGE analysis