Hb_008453_090

Information

Type -
Description -
Location Contig8453: 62448-72316
Sequence    

Annotation

kegg
ID rcu:RCOM_1598960
description lupus la ribonucleoprotein, putative
nr
ID KDP36886.1
description hypothetical protein JCGZ_08177 [Jatropha curcas]
swissprot
ID Q94K80
description La-related protein 1C OS=Arabidopsis thaliana GN=LARP1C PE=1 SV=1
trembl
ID A0A067KKW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08177 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la-related protein 1c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60215: 62543-72348 , PASA_asmbl_60216: 69959-70333 , PASA_asmbl_60218: 66486-66962 , PASA_asmbl_60221: 63587-71683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_090 0.0 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
2 Hb_004951_040 0.0562711306 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
3 Hb_016065_010 0.0596875895 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
4 Hb_000193_290 0.0661571546 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
5 Hb_055062_030 0.0671916753 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
6 Hb_003018_200 0.0690693918 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_005333_130 0.0710775309 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008289_060 0.071338217 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
9 Hb_000836_070 0.0756425735 - - protein binding protein, putative [Ricinus communis]
10 Hb_007101_130 0.076377333 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000457_150 0.0778555137 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
12 Hb_005488_010 0.0784562317 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000377_060 0.0794150505 - - ARF GTPase activator, putative [Ricinus communis]
14 Hb_178968_110 0.0797758723 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
15 Hb_006846_110 0.0824822527 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
16 Hb_000205_270 0.0834993718 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
17 Hb_131864_040 0.0840003667 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
18 Hb_000671_150 0.0856616116 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
19 Hb_003266_130 0.085743598 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
20 Hb_000883_050 0.0859177242 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]

Gene co-expression network

sample Hb_008453_090 Hb_008453_090 Hb_004951_040 Hb_004951_040 Hb_008453_090--Hb_004951_040 Hb_016065_010 Hb_016065_010 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_008453_090--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130 Hb_008289_060 Hb_008289_060 Hb_004951_040--Hb_008289_060 Hb_004951_040--Hb_055062_030 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_004951_040--Hb_005333_130 Hb_000205_270 Hb_000205_270 Hb_016065_010--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_016065_010--Hb_005488_010 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_006949_040 Hb_006949_040 Hb_000193_290--Hb_006949_040 Hb_000671_150 Hb_000671_150 Hb_000193_290--Hb_000671_150 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_000193_290--Hb_016065_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_007101_150 Hb_007101_150 Hb_003018_200--Hb_007101_150 Hb_000056_340 Hb_000056_340 Hb_003018_200--Hb_000056_340 Hb_007101_130 Hb_007101_130 Hb_003018_200--Hb_007101_130 Hb_005333_130--Hb_003018_200 Hb_000634_100 Hb_000634_100 Hb_005333_130--Hb_000634_100 Hb_023386_080 Hb_023386_080 Hb_005333_130--Hb_023386_080 Hb_003216_100 Hb_003216_100 Hb_005333_130--Hb_003216_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.6773 22.1759 11.3571 11.5897 35.8423 44.7162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2025 76.7986 76.9721 19.5779 10.2088

CAGE analysis