Hb_008453_140

Information

Type -
Description -
Location Contig8453: 95419-97619
Sequence    

Annotation

kegg
ID rcu:RCOM_1598810
description skp1, putative
nr
ID XP_012073749.1
description PREDICTED: SKP1-like protein 1B [Jatropha curcas]
swissprot
ID Q9FHW7
description SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1
trembl
ID A0A067KYF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08180 PE=4 SV=1
Gene Ontology
ID GO:0006511
description skp1-like protein 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60223: 95456-97596
cDNA
(Sanger)
(ID:Location)		 011_G23.ab1: 95488-97589 , 016_D04.ab1: 95488-97589 , 018_I15.ab1: 95513-97596 , 039_C06.ab1: 95492-97565

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_140 0.0 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
2 Hb_120410_010 0.0402273471 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
3 Hb_010381_090 0.044337244 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
4 Hb_003125_120 0.0497796777 - - PREDICTED: TITAN-like protein [Jatropha curcas]
5 Hb_001142_030 0.0527555249 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
6 Hb_002872_030 0.0538880753 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
7 Hb_000220_010 0.0541118898 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
8 Hb_000484_030 0.0551426803 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
9 Hb_001163_050 0.058365683 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
10 Hb_007416_340 0.0615255422 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_007416_300 0.0630598442 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
12 Hb_002740_030 0.0639317189 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
13 Hb_001408_040 0.0649284603 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
14 Hb_003001_080 0.0649587898 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
15 Hb_011995_010 0.0658578611 - - dc50, putative [Ricinus communis]
16 Hb_000696_230 0.066225527 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
17 Hb_002518_280 0.0674818613 - - phosphate transporter [Manihot esculenta]
18 Hb_000866_410 0.0677225884 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
19 Hb_000308_030 0.0677921759 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_000403_050 0.0679188933 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008453_140 Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_001142_030 Hb_001142_030 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_120410_010--Hb_010381_090 Hb_007416_300 Hb_007416_300 Hb_010381_090--Hb_007416_300 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_003125_120--Hb_001142_030 Hb_001142_030--Hb_002740_030 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_027428_010 Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_002872_030--Hb_007416_300 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_007451_010 Hb_007451_010 Hb_000220_010--Hb_007451_010 Hb_014720_120 Hb_014720_120 Hb_000220_010--Hb_014720_120 Hb_000220_010--Hb_010381_090 Hb_000220_010--Hb_120410_010 Hb_000220_010--Hb_002740_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
175.633 159.737 167.902 136.9 183.613 184.544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
147.507 205.909 129.974 127.676 107.467

CAGE analysis