Hb_008461_060

Information

Type -
Description -
Location Contig8461: 88201-97490
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07920g
description POPTRDRAFT_879208; hypothetical protein
nr
ID KDP45772.1
description hypothetical protein JCGZ_17379 [Jatropha curcas]
swissprot
ID C0LGU7
description Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1
trembl
ID A0A067LBM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17379 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor-like protein kinase at3g56050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60231: 92086-97259 , PASA_asmbl_60232: 92385-94969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008461_060 0.0 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
2 Hb_002151_070 0.0870989816 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
3 Hb_001289_070 0.0914734586 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_002081_020 0.09179935 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
5 Hb_158092_050 0.0940027495 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
6 Hb_000813_070 0.0941322298 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001001_070 0.0944328945 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
8 Hb_000173_240 0.0944567232 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015807_130 0.0989411424 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
10 Hb_002835_360 0.1027666583 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
11 Hb_002078_180 0.1034846645 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
12 Hb_001140_290 0.1079812089 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
13 Hb_001688_050 0.1082463134 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
14 Hb_009476_080 0.1099732216 - - BnaA03g18920D [Brassica napus]
15 Hb_001511_220 0.1121520854 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
16 Hb_000103_440 0.1128763297 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
17 Hb_001279_400 0.1132197993 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
18 Hb_001699_080 0.1134866193 - - unnamed protein product [Coffea canephora]
19 Hb_003177_040 0.1137452336 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
20 Hb_001514_050 0.114067749 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]

Gene co-expression network

sample Hb_008461_060 Hb_008461_060 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_002081_020 Hb_002081_020 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_001001_070 Hb_001001_070 Hb_008461_060--Hb_001001_070 Hb_001140_290 Hb_001140_290 Hb_002151_070--Hb_001140_290 Hb_005000_150 Hb_005000_150 Hb_002151_070--Hb_005000_150 Hb_000103_440 Hb_000103_440 Hb_002151_070--Hb_000103_440 Hb_002151_070--Hb_000813_070 Hb_005711_030 Hb_005711_030 Hb_002151_070--Hb_005711_030 Hb_002151_070--Hb_001289_070 Hb_001289_070--Hb_005711_030 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_001289_070--Hb_005000_150 Hb_003152_020 Hb_003152_020 Hb_001289_070--Hb_003152_020 Hb_001289_070--Hb_000813_070 Hb_002081_020--Hb_015807_130 Hb_001699_080 Hb_001699_080 Hb_002081_020--Hb_001699_080 Hb_002081_020--Hb_001289_070 Hb_002081_020--Hb_001001_070 Hb_001688_050 Hb_001688_050 Hb_002081_020--Hb_001688_050 Hb_000173_240 Hb_000173_240 Hb_158092_050--Hb_000173_240 Hb_116701_010 Hb_116701_010 Hb_158092_050--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_158092_050--Hb_000130_350 Hb_031284_060 Hb_031284_060 Hb_158092_050--Hb_031284_060 Hb_000193_320 Hb_000193_320 Hb_158092_050--Hb_000193_320 Hb_000813_070--Hb_005711_030 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001279_400 Hb_001279_400 Hb_000813_070--Hb_001279_400 Hb_000813_070--Hb_001688_050 Hb_000251_120 Hb_000251_120 Hb_001001_070--Hb_000251_120 Hb_000108_180 Hb_000108_180 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441649 7.84804 14.3938 97.4206 1.24034 0.599371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.474401 0.70398 0.919128 1.6747 69.5353

CAGE analysis