Hb_008468_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig8468: 47697-52473
Sequence    

Annotation

kegg
ID cit:102617995
description disease resistance RPP13-like protein 4-like
nr
ID XP_012080879.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A067K6D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16251 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60241: 47623-52794 , PASA_asmbl_60242: 47623-48826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008468_030 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_007576_200 0.1221348754 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000120_230 0.1239749763 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
4 Hb_000649_120 0.1272389973 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000056_280 0.1283254824 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_000025_400 0.1297081802 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
7 Hb_000028_340 0.1406496739 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
8 Hb_000465_260 0.1423370039 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
9 Hb_003747_210 0.1448427228 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
10 Hb_111051_010 0.1457390714 - - Disease resistance protein RGA2, putative [Ricinus communis]
11 Hb_009646_010 0.1480283595 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
12 Hb_000110_300 0.1495391921 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
13 Hb_005779_030 0.150582738 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
14 Hb_003506_020 0.1512102149 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
15 Hb_002122_080 0.1520203534 - - -
16 Hb_001818_060 0.156754999 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
17 Hb_000805_190 0.1587015252 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
18 Hb_002876_250 0.1616228829 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
19 Hb_000656_150 0.1621678053 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_008221_170 0.1628617944 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_008468_030 Hb_008468_030 Hb_007576_200 Hb_007576_200 Hb_008468_030--Hb_007576_200 Hb_000120_230 Hb_000120_230 Hb_008468_030--Hb_000120_230 Hb_000649_120 Hb_000649_120 Hb_008468_030--Hb_000649_120 Hb_000056_280 Hb_000056_280 Hb_008468_030--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_008468_030--Hb_000025_400 Hb_000028_340 Hb_000028_340 Hb_008468_030--Hb_000028_340 Hb_003747_210 Hb_003747_210 Hb_007576_200--Hb_003747_210 Hb_000371_060 Hb_000371_060 Hb_007576_200--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_007576_200--Hb_000676_040 Hb_000656_150 Hb_000656_150 Hb_007576_200--Hb_000656_150 Hb_000302_200 Hb_000302_200 Hb_007576_200--Hb_000302_200 Hb_002122_080 Hb_002122_080 Hb_007576_200--Hb_002122_080 Hb_011287_010 Hb_011287_010 Hb_000120_230--Hb_011287_010 Hb_029510_100 Hb_029510_100 Hb_000120_230--Hb_029510_100 Hb_006683_020 Hb_006683_020 Hb_000120_230--Hb_006683_020 Hb_005914_140 Hb_005914_140 Hb_000120_230--Hb_005914_140 Hb_005970_010 Hb_005970_010 Hb_000120_230--Hb_005970_010 Hb_002235_310 Hb_002235_310 Hb_000649_120--Hb_002235_310 Hb_000072_020 Hb_000072_020 Hb_000649_120--Hb_000072_020 Hb_000866_110 Hb_000866_110 Hb_000649_120--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_000649_120--Hb_000205_250 Hb_000080_110 Hb_000080_110 Hb_000649_120--Hb_000080_110 Hb_000000_120 Hb_000000_120 Hb_000649_120--Hb_000000_120 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_033363_010 Hb_033363_010 Hb_000056_280--Hb_033363_010 Hb_000025_400--Hb_000465_260 Hb_000025_400--Hb_000056_280 Hb_002928_120 Hb_002928_120 Hb_000025_400--Hb_002928_120 Hb_005016_020 Hb_005016_020 Hb_000025_400--Hb_005016_020 Hb_004631_110 Hb_004631_110 Hb_000025_400--Hb_004631_110 Hb_000062_640 Hb_000062_640 Hb_000028_340--Hb_000062_640 Hb_000028_340--Hb_000056_280 Hb_003470_050 Hb_003470_050 Hb_000028_340--Hb_003470_050 Hb_000028_340--Hb_000649_120 Hb_006469_070 Hb_006469_070 Hb_000028_340--Hb_006469_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8804 59.2316 10.0665 58.4129 5.31778 11.4684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4222 5.99571 17.3314 38.5651 14.7117

CAGE analysis