Hb_008473_010

Information

Type -
Description -
Location Contig8473: 7443-8406
Sequence    

Annotation

kegg
ID mdm:103443943
description laccase-14-like
nr
ID XP_012075464.1
description PREDICTED: laccase-14-like [Jatropha curcas]
swissprot
ID Q9FY79
description Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1
trembl
ID A0A067KJC4
description Laccase OS=Jatropha curcas GN=JCGZ_11126 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008473_010 0.0 - - PREDICTED: laccase-14-like [Jatropha curcas]
2 Hb_091369_010 0.0009832345 - - -
3 Hb_002673_050 0.003013981 - - -
4 Hb_000944_010 0.0106791256 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_003400_030 0.0107774063 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
6 Hb_002400_450 0.0155042595 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
7 Hb_000260_190 0.0179464809 - - -
8 Hb_034667_010 0.0221056323 - - -
9 Hb_008151_030 0.0286065603 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_010399_020 0.0325097304 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_108404_010 0.0514804269 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_013205_010 0.064876467 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
13 Hb_128287_010 0.070217279 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000204_180 0.1114480941 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_000227_110 0.139097605 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
16 Hb_027394_010 0.1417434213 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_068347_020 0.1417645707 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_009066_010 0.1468241439 - - -
19 Hb_002141_010 0.1507341162 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_021068_020 0.1674966464 - - -

Gene co-expression network

sample Hb_008473_010 Hb_008473_010 Hb_091369_010 Hb_091369_010 Hb_008473_010--Hb_091369_010 Hb_002673_050 Hb_002673_050 Hb_008473_010--Hb_002673_050 Hb_000944_010 Hb_000944_010 Hb_008473_010--Hb_000944_010 Hb_003400_030 Hb_003400_030 Hb_008473_010--Hb_003400_030 Hb_002400_450 Hb_002400_450 Hb_008473_010--Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_008473_010--Hb_000260_190 Hb_091369_010--Hb_002673_050 Hb_091369_010--Hb_000944_010 Hb_091369_010--Hb_003400_030 Hb_091369_010--Hb_002400_450 Hb_091369_010--Hb_000260_190 Hb_002673_050--Hb_000944_010 Hb_002673_050--Hb_003400_030 Hb_002673_050--Hb_002400_450 Hb_002673_050--Hb_000260_190 Hb_000944_010--Hb_003400_030 Hb_000944_010--Hb_002400_450 Hb_000944_010--Hb_000260_190 Hb_034667_010 Hb_034667_010 Hb_000944_010--Hb_034667_010 Hb_003400_030--Hb_002400_450 Hb_003400_030--Hb_000260_190 Hb_003400_030--Hb_034667_010 Hb_002400_450--Hb_000260_190 Hb_002400_450--Hb_034667_010 Hb_008151_030 Hb_008151_030 Hb_002400_450--Hb_008151_030 Hb_000260_190--Hb_034667_010 Hb_000260_190--Hb_008151_030 Hb_010399_020 Hb_010399_020 Hb_000260_190--Hb_010399_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.428023 0.381559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis