Hb_008479_020

Information

Type -
Description -
Location Contig8479: 19202-27287
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID XP_011659859.1
description PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A5B9L3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019494 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008479_020 0.0 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
2 Hb_001085_100 0.1371122999 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_001832_020 0.137415687 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
4 Hb_009813_080 0.2020972244 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
5 Hb_002311_170 0.2135681695 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
6 Hb_003052_230 0.2201583893 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027472_230 0.2503050551 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_007101_290 0.2604295918 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
9 Hb_001856_090 0.2639794281 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
10 Hb_008289_050 0.2676507127 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
11 Hb_001703_110 0.2885247602 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
12 Hb_001798_020 0.2970584718 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
13 Hb_006420_090 0.2991810269 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
14 Hb_036790_010 0.3048760196 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
15 Hb_001369_280 0.3056181032 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
16 Hb_000496_090 0.3066815018 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
17 Hb_022137_030 0.3090463554 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
18 Hb_002740_020 0.3104950605 - - -
19 Hb_115472_010 0.3113961039 - - -
20 Hb_003435_060 0.3120426129 - - carbonic anhydrase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008479_020 Hb_008479_020 Hb_001085_100 Hb_001085_100 Hb_008479_020--Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_008479_020--Hb_001832_020 Hb_009813_080 Hb_009813_080 Hb_008479_020--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_008479_020--Hb_002311_170 Hb_003052_230 Hb_003052_230 Hb_008479_020--Hb_003052_230 Hb_027472_230 Hb_027472_230 Hb_008479_020--Hb_027472_230 Hb_001085_100--Hb_001832_020 Hb_001856_090 Hb_001856_090 Hb_001085_100--Hb_001856_090 Hb_001085_100--Hb_009813_080 Hb_001085_100--Hb_002311_170 Hb_001085_100--Hb_027472_230 Hb_001832_020--Hb_001856_090 Hb_001832_020--Hb_027472_230 Hb_032631_010 Hb_032631_010 Hb_001832_020--Hb_032631_010 Hb_001045_050 Hb_001045_050 Hb_001832_020--Hb_001045_050 Hb_009813_080--Hb_002311_170 Hb_009813_080--Hb_003052_230 Hb_003960_020 Hb_003960_020 Hb_009813_080--Hb_003960_020 Hb_011077_020 Hb_011077_020 Hb_009813_080--Hb_011077_020 Hb_002311_170--Hb_003960_020 Hb_002311_170--Hb_003052_230 Hb_002311_170--Hb_011077_020 Hb_083103_030 Hb_083103_030 Hb_003052_230--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_003052_230--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_003052_230--Hb_172503_010 Hb_001995_020 Hb_001995_020 Hb_003052_230--Hb_001995_020 Hb_115472_010 Hb_115472_010 Hb_003052_230--Hb_115472_010 Hb_004195_180 Hb_004195_180 Hb_027472_230--Hb_004195_180 Hb_008289_050 Hb_008289_050 Hb_027472_230--Hb_008289_050 Hb_001720_060 Hb_001720_060 Hb_027472_230--Hb_001720_060 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00648492 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0140556 0 0.0167458 0

CAGE analysis