Hb_008484_010

Information

Type -
Description -
Location Contig8484: 14566-17761
Sequence    

Annotation

kegg
ID eus:EUTSA_v10024702mg
description hypothetical protein
nr
ID KJB48026.1
description hypothetical protein B456_008G050700 [Gossypium raimondii]
swissprot
ID Q8VXY9
description Ureidoglycolate hydrolase OS=Arabidopsis thaliana GN=UAH PE=1 SV=1
trembl
ID A0A0D2T0Q7
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G050700 PE=4 SV=1
Gene Ontology
ID GO:0008237
description allantoate deiminase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60263: 14769-54292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008484_010 0.0 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
2 Hb_041828_010 0.0435141742 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
3 Hb_000347_560 0.0831535041 - - -
4 Hb_000004_030 0.0899420811 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
5 Hb_002400_330 0.0914160011 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
6 Hb_000345_360 0.096173949 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
7 Hb_000284_120 0.0975840146 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
8 Hb_004223_290 0.0985713551 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
9 Hb_000960_040 0.0992974334 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
10 Hb_000990_090 0.1003017111 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_000183_050 0.1039867418 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
12 Hb_000062_020 0.1059896349 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000780_190 0.106075708 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
14 Hb_001948_130 0.1080776641 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
15 Hb_000718_080 0.1082129054 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
16 Hb_000035_410 0.1083245845 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
17 Hb_000264_350 0.1084881354 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
18 Hb_162275_040 0.1100392417 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007994_010 0.1112166873 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
20 Hb_004659_020 0.1119363717 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_008484_010 Hb_008484_010 Hb_041828_010 Hb_041828_010 Hb_008484_010--Hb_041828_010 Hb_000347_560 Hb_000347_560 Hb_008484_010--Hb_000347_560 Hb_000004_030 Hb_000004_030 Hb_008484_010--Hb_000004_030 Hb_002400_330 Hb_002400_330 Hb_008484_010--Hb_002400_330 Hb_000345_360 Hb_000345_360 Hb_008484_010--Hb_000345_360 Hb_000284_120 Hb_000284_120 Hb_008484_010--Hb_000284_120 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_041828_010--Hb_000345_360 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_162275_040 Hb_162275_040 Hb_000347_560--Hb_162275_040 Hb_004701_050 Hb_004701_050 Hb_000347_560--Hb_004701_050 Hb_002631_140 Hb_002631_140 Hb_000347_560--Hb_002631_140 Hb_000069_570 Hb_000069_570 Hb_000347_560--Hb_000069_570 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_002611_020 Hb_002611_020 Hb_002400_330--Hb_002611_020 Hb_002400_330--Hb_041828_010 Hb_050912_010 Hb_050912_010 Hb_002400_330--Hb_050912_010 Hb_149225_010 Hb_149225_010 Hb_002400_330--Hb_149225_010 Hb_002400_330--Hb_004659_020 Hb_004875_030 Hb_004875_030 Hb_000345_360--Hb_004875_030 Hb_000990_090 Hb_000990_090 Hb_000345_360--Hb_000990_090 Hb_000345_360--Hb_004223_290 Hb_009529_030 Hb_009529_030 Hb_000345_360--Hb_009529_030 Hb_000345_360--Hb_002391_290 Hb_000284_120--Hb_000004_030 Hb_001431_120 Hb_001431_120 Hb_000284_120--Hb_001431_120 Hb_000284_120--Hb_041828_010 Hb_000284_120--Hb_000264_350 Hb_007456_040 Hb_007456_040 Hb_000284_120--Hb_007456_040 Hb_000284_120--Hb_000960_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70718 13.2798 10.1717 20.5681 16.4404 31.4111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.32173 4.3875 8.3718 15.9374 20.3758

CAGE analysis