Hb_008484_060

Information

Type -
Description -
Location Contig8484: 53145-54172
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16010g
description peptidase M20/M25/M40 family protein
nr
ID XP_011035488.1
description PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
swissprot
ID O49434
description Allantoate deiminase OS=Arabidopsis thaliana GN=AAH PE=1 SV=2
trembl
ID U5GU02
description Peptidase M20/M25/M40 family protein OS=Populus trichocarpa GN=POPTR_0001s16010g PE=4 SV=1
Gene Ontology
ID GO:0008237
description allantoate deiminase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60263: 14769-54292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008484_060 0.0 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
2 Hb_009976_020 0.060314854 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
3 Hb_003734_010 0.0619060754 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
4 Hb_000830_030 0.0623810902 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
5 Hb_012760_100 0.0637436335 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
6 Hb_011231_020 0.0661883598 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
7 Hb_056691_060 0.0714629686 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
8 Hb_004586_220 0.0746098799 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
9 Hb_001814_030 0.0750748518 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
10 Hb_000227_220 0.0763645532 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
11 Hb_007994_010 0.0776954059 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
12 Hb_001655_030 0.0783508253 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
13 Hb_001343_040 0.0799885691 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
14 Hb_000170_090 0.0801627261 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
15 Hb_000960_040 0.0806638718 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
16 Hb_000110_190 0.0807726502 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_002414_050 0.0816113221 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
18 Hb_000592_030 0.0817286498 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
19 Hb_000656_070 0.0829329913 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_007747_040 0.0837778306 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]

Gene co-expression network

sample Hb_008484_060 Hb_008484_060 Hb_009976_020 Hb_009976_020 Hb_008484_060--Hb_009976_020 Hb_003734_010 Hb_003734_010 Hb_008484_060--Hb_003734_010 Hb_000830_030 Hb_000830_030 Hb_008484_060--Hb_000830_030 Hb_012760_100 Hb_012760_100 Hb_008484_060--Hb_012760_100 Hb_011231_020 Hb_011231_020 Hb_008484_060--Hb_011231_020 Hb_056691_060 Hb_056691_060 Hb_008484_060--Hb_056691_060 Hb_009976_020--Hb_011231_020 Hb_009976_020--Hb_012760_100 Hb_001814_030 Hb_001814_030 Hb_009976_020--Hb_001814_030 Hb_000227_220 Hb_000227_220 Hb_009976_020--Hb_000227_220 Hb_009976_020--Hb_003734_010 Hb_001062_010 Hb_001062_010 Hb_009976_020--Hb_001062_010 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_003734_010--Hb_001814_030 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_003734_010--Hb_012760_100 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_000022_020 Hb_000022_020 Hb_000830_030--Hb_000022_020 Hb_002785_050 Hb_002785_050 Hb_000830_030--Hb_002785_050 Hb_000830_030--Hb_056691_060 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_012760_100--Hb_056691_060 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_001655_030 Hb_001655_030 Hb_011231_020--Hb_001655_030 Hb_011231_020--Hb_001814_030 Hb_002890_130 Hb_002890_130 Hb_011231_020--Hb_002890_130 Hb_011231_020--Hb_003734_010 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9267 19.5251 17.8173 22.6381 20.5401 33.1625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8542 14.4399 13.7107 27.3986 27.121

CAGE analysis