Hb_008494_030

Information

Type -
Description -
Location Contig8494: 37240-41853
Sequence    

Annotation

kegg
ID rcu:RCOM_0817300
description catalytic, putative
nr
ID XP_002518318.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FGF0
description Phosphoglycerate mutase-like protein 1 OS=Arabidopsis thaliana GN=At5g64460 PE=2 SV=1
trembl
ID B9RX49
description Catalytic, putative OS=Ricinus communis GN=RCOM_0817300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60311: 37214-42490 , PASA_asmbl_60312: 37282-42429 , PASA_asmbl_60313: 37666-42429 , PASA_asmbl_60314: 40468-41124
cDNA
(Sanger)
(ID:Location)		 036_C05.ab1: 39308-42490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008494_030 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001663_130 0.1159934393 - - acyl-CoA thioesterase, putative [Ricinus communis]
3 Hb_004158_050 0.1177772946 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
4 Hb_001623_490 0.1192294708 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
5 Hb_001999_320 0.1218666022 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
6 Hb_003849_160 0.1224313106 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
7 Hb_003687_080 0.1236999104 - - PREDICTED: casein kinase I-like [Jatropha curcas]
8 Hb_012779_080 0.1249127387 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
9 Hb_002900_150 0.1251168322 - - PREDICTED: syntaxin-81 [Jatropha curcas]
10 Hb_007594_080 0.1257845939 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
11 Hb_000529_130 0.1275046735 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
12 Hb_000042_110 0.1282723314 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
13 Hb_000186_300 0.128859431 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
14 Hb_172632_130 0.1294528724 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
15 Hb_003683_030 0.1307496822 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
16 Hb_002026_090 0.1312564119 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
17 Hb_010620_050 0.1312672743 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
18 Hb_004324_210 0.1322166179 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
19 Hb_003640_050 0.1351574938 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_001160_110 0.1352091251 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_008494_030 Hb_008494_030 Hb_001663_130 Hb_001663_130 Hb_008494_030--Hb_001663_130 Hb_004158_050 Hb_004158_050 Hb_008494_030--Hb_004158_050 Hb_001623_490 Hb_001623_490 Hb_008494_030--Hb_001623_490 Hb_001999_320 Hb_001999_320 Hb_008494_030--Hb_001999_320 Hb_003849_160 Hb_003849_160 Hb_008494_030--Hb_003849_160 Hb_003687_080 Hb_003687_080 Hb_008494_030--Hb_003687_080 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_002026_090 Hb_002026_090 Hb_004158_050--Hb_002026_090 Hb_000327_330 Hb_000327_330 Hb_004158_050--Hb_000327_330 Hb_004158_050--Hb_001623_490 Hb_004158_050--Hb_003687_080 Hb_004158_050--Hb_007594_080 Hb_004158_050--Hb_001160_110 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_001623_490--Hb_002026_090 Hb_002218_020 Hb_002218_020 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_001059_060 Hb_001059_060 Hb_001999_320--Hb_001059_060 Hb_001999_320--Hb_003849_160 Hb_003912_080 Hb_003912_080 Hb_001999_320--Hb_003912_080 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_009078_020 Hb_009078_020 Hb_001999_320--Hb_009078_020 Hb_029552_020 Hb_029552_020 Hb_003849_160--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_003849_160--Hb_000529_130 Hb_002675_080 Hb_002675_080 Hb_003849_160--Hb_002675_080 Hb_003849_160--Hb_009078_020 Hb_000968_060 Hb_000968_060 Hb_003849_160--Hb_000968_060 Hb_003687_080--Hb_001160_110 Hb_003687_080--Hb_000327_330 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83701 11.7651 25.6415 18.119 5.53244 5.67741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12625 2.62578 0.814824 3.93069 18.3903

CAGE analysis