Hb_008494_050

Information

Type -
Description -
Location Contig8494: 69426-88123
Sequence    

Annotation

kegg
ID vvi:100250169
description LRR receptor-like serine/threonine-protein kinase GSO2
nr
ID XP_012065698.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID Q7F8Q9
description Leucine-rich repeat receptor protein kinase MSL1 OS=Oryza sativa subsp. japonica GN=MSL1 PE=2 SV=1
trembl
ID A0A067LG82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16857 PE=4 SV=1
Gene Ontology
ID GO:0003824
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60316: 77150-82135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008494_050 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_000566_030 0.2030450324 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
3 Hb_000853_400 0.2126673674 - - PREDICTED: CTP synthase [Jatropha curcas]
4 Hb_000334_180 0.2174657918 - - hypothetical protein JCGZ_16779 [Jatropha curcas]
5 Hb_002666_020 0.2225093457 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
6 Hb_007590_070 0.2453314082 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
7 Hb_004103_030 0.2468281323 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008778_010 0.2475050185 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_006268_020 0.2479090662 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
10 Hb_000000_100 0.2501958866 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
11 Hb_000733_210 0.2512798597 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
12 Hb_183443_010 0.2544782948 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
13 Hb_004899_060 0.2549432705 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
14 Hb_001781_020 0.2551143045 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
15 Hb_000108_170 0.2554334849 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
16 Hb_002863_120 0.2578770159 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
17 Hb_001636_020 0.2596154716 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
18 Hb_000432_060 0.2616180991 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001021_070 0.2640207689 - - unnamed protein product [Vitis vinifera]
20 Hb_004462_010 0.2644018955 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_008494_050 Hb_008494_050 Hb_000566_030 Hb_000566_030 Hb_008494_050--Hb_000566_030 Hb_000853_400 Hb_000853_400 Hb_008494_050--Hb_000853_400 Hb_000334_180 Hb_000334_180 Hb_008494_050--Hb_000334_180 Hb_002666_020 Hb_002666_020 Hb_008494_050--Hb_002666_020 Hb_007590_070 Hb_007590_070 Hb_008494_050--Hb_007590_070 Hb_004103_030 Hb_004103_030 Hb_008494_050--Hb_004103_030 Hb_001781_020 Hb_001781_020 Hb_000566_030--Hb_001781_020 Hb_001021_070 Hb_001021_070 Hb_000566_030--Hb_001021_070 Hb_001221_140 Hb_001221_140 Hb_000566_030--Hb_001221_140 Hb_000566_030--Hb_000334_180 Hb_000366_200 Hb_000366_200 Hb_000566_030--Hb_000366_200 Hb_004411_030 Hb_004411_030 Hb_000566_030--Hb_004411_030 Hb_010427_010 Hb_010427_010 Hb_000853_400--Hb_010427_010 Hb_000270_520 Hb_000270_520 Hb_000853_400--Hb_000270_520 Hb_012738_030 Hb_012738_030 Hb_000853_400--Hb_012738_030 Hb_003449_070 Hb_003449_070 Hb_000853_400--Hb_003449_070 Hb_005976_050 Hb_005976_050 Hb_000853_400--Hb_005976_050 Hb_000212_310 Hb_000212_310 Hb_000853_400--Hb_000212_310 Hb_008778_010 Hb_008778_010 Hb_000334_180--Hb_008778_010 Hb_007380_040 Hb_007380_040 Hb_000334_180--Hb_007380_040 Hb_183443_010 Hb_183443_010 Hb_000334_180--Hb_183443_010 Hb_002035_080 Hb_002035_080 Hb_000334_180--Hb_002035_080 Hb_001636_020 Hb_001636_020 Hb_000334_180--Hb_001636_020 Hb_000733_210 Hb_000733_210 Hb_002666_020--Hb_000733_210 Hb_002666_020--Hb_000853_400 Hb_002666_020--Hb_001636_020 Hb_004724_120 Hb_004724_120 Hb_002666_020--Hb_004724_120 Hb_000544_050 Hb_000544_050 Hb_002666_020--Hb_000544_050 Hb_000193_140 Hb_000193_140 Hb_002666_020--Hb_000193_140 Hb_134469_010 Hb_134469_010 Hb_007590_070--Hb_134469_010 Hb_090855_010 Hb_090855_010 Hb_007590_070--Hb_090855_010 Hb_010874_020 Hb_010874_020 Hb_007590_070--Hb_010874_020 Hb_007590_070--Hb_000733_210 Hb_007590_070--Hb_000193_140 Hb_007590_070--Hb_010427_010 Hb_097968_010 Hb_097968_010 Hb_004103_030--Hb_097968_010 Hb_004103_030--Hb_183443_010 Hb_000512_070 Hb_000512_070 Hb_004103_030--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004103_030--Hb_001242_090 Hb_000000_100 Hb_000000_100 Hb_004103_030--Hb_000000_100 Hb_004103_030--Hb_007590_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.056311 0.14544 0.0710518 0.165065 0.0399776 0.165115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0124872 0 0.331973 0.417716 0.0529405

CAGE analysis