Hb_008494_100

Information

Type -
Description -
Location Contig8494: 109009-112192
Sequence    

Annotation

kegg
ID rcu:RCOM_0817000
description Sporulation protein RMD5, putative
nr
ID XP_012074561.1
description PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
swissprot
ID Q6GLP4
description Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1
trembl
ID A0A067KI79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09908 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein rmd5 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60319: 111620-112038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008494_100 0.0 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
2 Hb_000390_300 0.0550700995 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
3 Hb_007676_080 0.0649525563 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
4 Hb_008847_030 0.0710618939 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
5 Hb_004586_420 0.0734671473 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
6 Hb_000003_230 0.0752614823 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_000340_180 0.0758991102 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
8 Hb_000081_160 0.0774547678 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
9 Hb_010423_030 0.0782080017 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
10 Hb_003416_010 0.0793160405 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
11 Hb_024439_010 0.0795863924 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
12 Hb_001278_100 0.081031538 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
13 Hb_008453_030 0.0810380967 - - Thioredoxin superfamily protein [Theobroma cacao]
14 Hb_001489_090 0.0812761798 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
15 Hb_001314_050 0.0817801307 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
16 Hb_003605_090 0.0820707166 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
17 Hb_012022_040 0.0833715581 - - Protein SIS1, putative [Ricinus communis]
18 Hb_000431_170 0.0836921067 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
19 Hb_002169_040 0.0837232077 - - unknown [Populus trichocarpa]
20 Hb_000288_030 0.0843783483 - - PREDICTED: syntaxin-32 [Jatropha curcas]

Gene co-expression network

sample Hb_008494_100 Hb_008494_100 Hb_000390_300 Hb_000390_300 Hb_008494_100--Hb_000390_300 Hb_007676_080 Hb_007676_080 Hb_008494_100--Hb_007676_080 Hb_008847_030 Hb_008847_030 Hb_008494_100--Hb_008847_030 Hb_004586_420 Hb_004586_420 Hb_008494_100--Hb_004586_420 Hb_000003_230 Hb_000003_230 Hb_008494_100--Hb_000003_230 Hb_000340_180 Hb_000340_180 Hb_008494_100--Hb_000340_180 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_007676_080--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_007676_080--Hb_003304_020 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_007676_080--Hb_006573_190 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_002641_060 Hb_002641_060 Hb_008847_030--Hb_002641_060 Hb_004586_420--Hb_006573_190 Hb_004586_420--Hb_000003_230 Hb_004586_420--Hb_007676_080 Hb_001489_090 Hb_001489_090 Hb_004586_420--Hb_001489_090 Hb_004586_420--Hb_000390_300 Hb_000003_230--Hb_003304_020 Hb_003582_060 Hb_003582_060 Hb_000003_230--Hb_003582_060 Hb_000003_230--Hb_006573_190 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_000340_180--Hb_003938_090 Hb_000035_180 Hb_000035_180 Hb_000340_180--Hb_000035_180 Hb_001278_100 Hb_001278_100 Hb_000340_180--Hb_001278_100 Hb_005496_140 Hb_005496_140 Hb_000340_180--Hb_005496_140 Hb_000340_180--Hb_000003_230 Hb_000340_180--Hb_004058_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33563 2.22775 2.5474 4.35099 3.42069 3.06297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12756 6.75318 3.92567 3.63876 3.60557

CAGE analysis