Hb_008500_010

Information

Type -
Description -
Location Contig8500: 47505-49601
Sequence    

Annotation

kegg
ID rcu:RCOM_0810170
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067178.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
swissprot
ID Q9SII7
description Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=3 SV=2
trembl
ID A0A067L0T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03100 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g17210

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60404: 48577-49054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008500_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
2 Hb_006316_040 0.0439028131 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
3 Hb_001584_150 0.0589513179 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
4 Hb_012656_030 0.0593265494 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
5 Hb_004724_060 0.0672789596 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
6 Hb_015807_070 0.0694940618 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
7 Hb_002311_040 0.0704619134 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
8 Hb_004684_010 0.075447844 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
9 Hb_010172_090 0.0756265 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_009486_200 0.0757125373 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
11 Hb_000204_210 0.076215393 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
12 Hb_001507_020 0.0772169853 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
13 Hb_001818_070 0.0775331361 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_120327_010 0.0791789767 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
15 Hb_000827_070 0.079800488 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_007757_110 0.0800154054 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_000577_010 0.0802544058 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
18 Hb_001956_200 0.0817125235 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
19 Hb_005731_030 0.0845985978 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
20 Hb_000140_230 0.0855186878 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_008500_010 Hb_008500_010 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_000453_170 Hb_000453_170 Hb_006316_040--Hb_000453_170 Hb_011316_050 Hb_011316_050 Hb_006316_040--Hb_011316_050 Hb_000827_070 Hb_000827_070 Hb_006316_040--Hb_000827_070 Hb_010172_090 Hb_010172_090 Hb_006316_040--Hb_010172_090 Hb_005188_050 Hb_005188_050 Hb_006316_040--Hb_005188_050 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_001584_150--Hb_002311_040 Hb_014267_010 Hb_014267_010 Hb_012656_030--Hb_014267_010 Hb_000318_390 Hb_000318_390 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_003440_050 Hb_003440_050 Hb_012656_030--Hb_003440_050 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_002311_040--Hb_004684_010 Hb_009486_200 Hb_009486_200 Hb_002311_040--Hb_009486_200 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18054 2.76303 0.958777 0.877474 2.27346 3.24263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41346 1.90418 3.16748 1.74231 1.53342

CAGE analysis