Hb_008507_050

Information

Type -
Description -
Location Contig8507: 40756-43188
Sequence    

Annotation

kegg
ID csv:101215844
description S-adenosylmethionine decarboxylase proenzyme-like
nr
ID XP_012071583.1
description PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
swissprot
ID A2XV58
description S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2
trembl
ID A0A067KRC8
description S-adenosylmethionine decarboxylase proenzyme OS=Jatropha curcas GN=JCGZ_04089 PE=3 SV=1
Gene Ontology
ID GO:0016829
description s-adenosylmethionine decarboxylase proenzyme-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008507_050 0.0 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
2 Hb_116195_010 0.2066721724 - - -
3 Hb_002759_180 0.2666354454 - - PREDICTED: snakin-2-like [Jatropha curcas]
4 Hb_001493_110 0.2705979413 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
5 Hb_004324_020 0.2805653445 - - -
6 Hb_142392_010 0.2855216359 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
7 Hb_005529_010 0.2873943447 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000976_180 0.2875027697 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
9 Hb_001773_020 0.2925231765 - - hypothetical protein POPTR_0016s00980g [Populus trichocarpa]
10 Hb_019219_020 0.2974434839 - - profilin-1 [Jatropha curcas]
11 Hb_010680_010 0.3013413938 - - -
12 Hb_004230_030 0.306273422 - - hypothetical protein CISIN_1g043871mg [Citrus sinensis]
13 Hb_173902_040 0.3113215387 - - -
14 Hb_015456_020 0.3115649147 - - -
15 Hb_000109_150 0.313601893 - - conserved hypothetical protein [Ricinus communis]
16 Hb_017417_010 0.3199336899 - - -
17 Hb_001198_090 0.3211788553 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
18 Hb_004374_060 0.3238183697 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
19 Hb_002818_100 0.3246354495 - - hypothetical protein JCGZ_14122 [Jatropha curcas]
20 Hb_000525_060 0.3266247203 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_008507_050 Hb_008507_050 Hb_116195_010 Hb_116195_010 Hb_008507_050--Hb_116195_010 Hb_002759_180 Hb_002759_180 Hb_008507_050--Hb_002759_180 Hb_001493_110 Hb_001493_110 Hb_008507_050--Hb_001493_110 Hb_004324_020 Hb_004324_020 Hb_008507_050--Hb_004324_020 Hb_142392_010 Hb_142392_010 Hb_008507_050--Hb_142392_010 Hb_005529_010 Hb_005529_010 Hb_008507_050--Hb_005529_010 Hb_116195_010--Hb_142392_010 Hb_010680_010 Hb_010680_010 Hb_116195_010--Hb_010680_010 Hb_116195_010--Hb_004324_020 Hb_008078_030 Hb_008078_030 Hb_116195_010--Hb_008078_030 Hb_020730_010 Hb_020730_010 Hb_116195_010--Hb_020730_010 Hb_002759_180--Hb_005529_010 Hb_000933_050 Hb_000933_050 Hb_002759_180--Hb_000933_050 Hb_017170_020 Hb_017170_020 Hb_002759_180--Hb_017170_020 Hb_000001_110 Hb_000001_110 Hb_002759_180--Hb_000001_110 Hb_000098_190 Hb_000098_190 Hb_002759_180--Hb_000098_190 Hb_052135_030 Hb_052135_030 Hb_002759_180--Hb_052135_030 Hb_000521_140 Hb_000521_140 Hb_001493_110--Hb_000521_140 Hb_006096_040 Hb_006096_040 Hb_001493_110--Hb_006096_040 Hb_001810_030 Hb_001810_030 Hb_001493_110--Hb_001810_030 Hb_173902_040 Hb_173902_040 Hb_001493_110--Hb_173902_040 Hb_003751_060 Hb_003751_060 Hb_001493_110--Hb_003751_060 Hb_000525_060 Hb_000525_060 Hb_001493_110--Hb_000525_060 Hb_004048_140 Hb_004048_140 Hb_004324_020--Hb_004048_140 Hb_000012_180 Hb_000012_180 Hb_004324_020--Hb_000012_180 Hb_080083_010 Hb_080083_010 Hb_004324_020--Hb_080083_010 Hb_000525_040 Hb_000525_040 Hb_004324_020--Hb_000525_040 Hb_017417_010 Hb_017417_010 Hb_004324_020--Hb_017417_010 Hb_142392_010--Hb_010680_010 Hb_001265_010 Hb_001265_010 Hb_142392_010--Hb_001265_010 Hb_142392_010--Hb_080083_010 Hb_145761_010 Hb_145761_010 Hb_142392_010--Hb_145761_010 Hb_000088_060 Hb_000088_060 Hb_142392_010--Hb_000088_060 Hb_033080_010 Hb_033080_010 Hb_005529_010--Hb_033080_010 Hb_001198_090 Hb_001198_090 Hb_005529_010--Hb_001198_090 Hb_005529_010--Hb_000001_110 Hb_005529_010--Hb_000933_050 Hb_005333_040 Hb_005333_040 Hb_005529_010--Hb_005333_040 Hb_000307_170 Hb_000307_170 Hb_005529_010--Hb_000307_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58327 0.11316 0.960422 0.0408733 6.1519 0.0944131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79945 2.83094 0.179472 0.0128885 0

CAGE analysis