Hb_008511_120

Information

Type -
Description -
Location Contig8511: 108917-113024
Sequence    

Annotation

kegg
ID rcu:RCOM_1675130
description NADH-ubiquinone oxidoreductase 1, chain, putative (EC:1.6.99.3)
nr
ID XP_002509486.1
description NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
swissprot
ID P80269
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Solanum tuberosum PE=1 SV=2
trembl
ID B9RBF2
description NADH-ubiquinone oxidoreductase 1, chain, putative OS=Ricinus communis GN=RCOM_1675130 PE=3 SV=1
Gene Ontology
ID GO:0016020
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60427: 109041-112949
cDNA
(Sanger)
(ID:Location)		 002_C06.ab1: 109041-112737 , 007_N11.ab1: 109054-112735 , 026_I17.ab1: 109054-111431

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_120 0.0 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
2 Hb_032808_010 0.0648323076 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
3 Hb_005271_220 0.0656886669 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
4 Hb_002232_410 0.0673184458 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
5 Hb_003918_010 0.0725756691 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
6 Hb_000521_320 0.07642314 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
7 Hb_005357_080 0.0772005541 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
8 Hb_000030_030 0.0780626847 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
9 Hb_005730_120 0.0782743731 - - PREDICTED: protein WHI4 [Jatropha curcas]
10 Hb_006059_050 0.0786567706 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
11 Hb_000679_010 0.0810113918 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
12 Hb_002303_070 0.0812796684 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
13 Hb_004070_020 0.0824369178 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
14 Hb_025645_010 0.0827890604 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
15 Hb_000768_090 0.0829688146 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
16 Hb_000580_180 0.0833413514 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000684_380 0.0833772959 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_007423_040 0.0839133858 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
19 Hb_000331_550 0.0839332064 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
20 Hb_002311_180 0.0840349949 - - drought-responsive family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_008511_120 Hb_008511_120 Hb_032808_010 Hb_032808_010 Hb_008511_120--Hb_032808_010 Hb_005271_220 Hb_005271_220 Hb_008511_120--Hb_005271_220 Hb_002232_410 Hb_002232_410 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_032808_010--Hb_005271_220 Hb_002303_070 Hb_002303_070 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_005271_220--Hb_005730_120 Hb_005271_220--Hb_002232_410 Hb_005271_220--Hb_002303_070 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_002232_410--Hb_000732_010 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_172426_040 Hb_172426_040 Hb_003918_010--Hb_172426_040 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_000302_270 Hb_000302_270 Hb_000521_320--Hb_000302_270 Hb_000010_400 Hb_000010_400 Hb_000521_320--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010 Hb_000019_030 Hb_000019_030 Hb_005357_080--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_005357_080--Hb_000618_040 Hb_005357_080--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_005357_080--Hb_000215_110 Hb_003665_060 Hb_003665_060 Hb_005357_080--Hb_003665_060 Hb_003226_140 Hb_003226_140 Hb_005357_080--Hb_003226_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.8438 46.575 67.0867 59.5567 63.9893 54.6301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.4954 75.7953 66.2966 60.8265 30.8356

CAGE analysis