Hb_008528_010

Information

Type -
Description -
Location Contig8528: 8357-16951
Sequence    

Annotation

kegg
ID rcu:RCOM_1629030
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012065306.1
description PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
swissprot
ID Q55A09
description Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1
trembl
ID A0A067L9D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23031 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60449: 8263-16872 , PASA_asmbl_60450: 8263-16872 , PASA_asmbl_60451: 8431-8746 , PASA_asmbl_60452: 17344-17869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008528_010 0.0 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
2 Hb_000134_360 0.0665195434 - - PREDICTED: protein gar2 [Jatropha curcas]
3 Hb_000003_790 0.0764318686 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
4 Hb_001486_120 0.0823453008 - - PREDICTED: importin-5-like [Jatropha curcas]
5 Hb_001582_030 0.0832960873 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
6 Hb_022288_010 0.0836039888 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
7 Hb_012016_020 0.0900510123 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
8 Hb_000372_040 0.0916331829 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000317_440 0.0931762536 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
10 Hb_005000_270 0.093553762 - - unnamed protein product [Vitis vinifera]
11 Hb_000291_120 0.0942404325 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
12 Hb_002235_360 0.09462447 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
13 Hb_000805_310 0.0956059621 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
14 Hb_009421_030 0.0960738747 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
15 Hb_000136_150 0.0964504646 - - hypothetical protein VITISV_038366 [Vitis vinifera]
16 Hb_001871_040 0.0987881288 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
17 Hb_000077_050 0.0996378943 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001437_100 0.099730119 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
19 Hb_001431_070 0.099789783 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
20 Hb_000684_180 0.1001217916 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008528_010 Hb_008528_010 Hb_000134_360 Hb_000134_360 Hb_008528_010--Hb_000134_360 Hb_000003_790 Hb_000003_790 Hb_008528_010--Hb_000003_790 Hb_001486_120 Hb_001486_120 Hb_008528_010--Hb_001486_120 Hb_001582_030 Hb_001582_030 Hb_008528_010--Hb_001582_030 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_000134_360--Hb_001486_120 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_000317_440 Hb_000317_440 Hb_000003_790--Hb_000317_440 Hb_001975_020 Hb_001975_020 Hb_000003_790--Hb_001975_020 Hb_002235_320 Hb_002235_320 Hb_000003_790--Hb_002235_320 Hb_002725_070 Hb_002725_070 Hb_000003_790--Hb_002725_070 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_000016_110 Hb_000016_110 Hb_022288_010--Hb_000016_110 Hb_022288_010--Hb_000805_310 Hb_174865_050 Hb_174865_050 Hb_022288_010--Hb_174865_050 Hb_011496_010 Hb_011496_010 Hb_022288_010--Hb_011496_010 Hb_000208_290 Hb_000208_290 Hb_022288_010--Hb_000208_290 Hb_002341_030 Hb_002341_030 Hb_012016_020--Hb_002341_030 Hb_001871_040 Hb_001871_040 Hb_012016_020--Hb_001871_040 Hb_000453_080 Hb_000453_080 Hb_012016_020--Hb_000453_080 Hb_005399_010 Hb_005399_010 Hb_012016_020--Hb_005399_010 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.48 30.2815 9.2743 14.1398 110.841 140.095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.4128 24.4901 41.2045 18.6634 22.0087

CAGE analysis