Hb_008535_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig8535: 23912-25265
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05210g
description POPTRDRAFT_661736; basic helix-loop-helix family protein
nr
ID XP_002317910.1
description basic helix-loop-helix family protein [Populus trichocarpa]
swissprot
ID Q8GWK7
description Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1
trembl
ID B9I2L2
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0012s05210g PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bee 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60517: 23926-24309 , PASA_asmbl_60518: 24438-25329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008535_020 0.0 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
2 Hb_001247_050 0.0340936368 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
3 Hb_001277_390 0.0951156113 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
4 Hb_118941_010 0.0995837838 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_000224_070 0.1017456078 - - -
6 Hb_002701_200 0.1066325462 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
7 Hb_005976_030 0.1125105497 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
8 Hb_000258_010 0.1125655767 - - lipid transfer precursor protein [Hevea brasiliensis]
9 Hb_001892_040 0.1133806739 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
10 Hb_120496_010 0.1134451915 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
11 Hb_069237_010 0.1136330904 - - -
12 Hb_001591_020 0.1141306278 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
13 Hb_003729_040 0.1145963165 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_000733_170 0.1152579402 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
15 Hb_130357_010 0.115465432 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000530_080 0.1160266813 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
17 Hb_004032_170 0.1164831442 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
18 Hb_007432_040 0.1166794764 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
19 Hb_001347_020 0.1182675864 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
20 Hb_000422_100 0.1186611588 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]

Gene co-expression network

sample Hb_008535_020 Hb_008535_020 Hb_001247_050 Hb_001247_050 Hb_008535_020--Hb_001247_050 Hb_001277_390 Hb_001277_390 Hb_008535_020--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_008535_020--Hb_118941_010 Hb_000224_070 Hb_000224_070 Hb_008535_020--Hb_000224_070 Hb_002701_200 Hb_002701_200 Hb_008535_020--Hb_002701_200 Hb_005976_030 Hb_005976_030 Hb_008535_020--Hb_005976_030 Hb_001247_050--Hb_001277_390 Hb_001247_050--Hb_000224_070 Hb_001247_050--Hb_118941_010 Hb_120496_010 Hb_120496_010 Hb_001247_050--Hb_120496_010 Hb_069237_010 Hb_069237_010 Hb_001247_050--Hb_069237_010 Hb_001277_390--Hb_118941_010 Hb_001277_390--Hb_000224_070 Hb_001277_390--Hb_120496_010 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_118941_010--Hb_000224_070 Hb_000027_020 Hb_000027_020 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_000224_070--Hb_120496_010 Hb_000224_070--Hb_001892_040 Hb_000628_080 Hb_000628_080 Hb_002701_200--Hb_000628_080 Hb_000905_130 Hb_000905_130 Hb_002701_200--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_002701_200--Hb_000270_590 Hb_001804_020 Hb_001804_020 Hb_002701_200--Hb_001804_020 Hb_002701_200--Hb_001247_050 Hb_000296_030 Hb_000296_030 Hb_002701_200--Hb_000296_030 Hb_000258_010 Hb_000258_010 Hb_005976_030--Hb_000258_010 Hb_005976_030--Hb_001892_040 Hb_005976_030--Hb_069237_010 Hb_005976_030--Hb_001591_020 Hb_003729_040 Hb_003729_040 Hb_005976_030--Hb_003729_040 Hb_005976_030--Hb_000733_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0832839 0.322845 9.76769 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126575 0.049766 0 0 0

CAGE analysis