Hb_008536_020

Information

Type -
Description -
Location Contig8536: 6714-7205
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06120g
description POPTRDRAFT_562654; hypothetical protein
nr
ID XP_012075175.1
description PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
swissprot
ID Q9ZT50
description E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1
trembl
ID A0A067KJQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09357 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rha2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60520: 6994-7156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008536_020 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
2 Hb_002600_170 0.0479117656 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006831_090 0.0509671672 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
4 Hb_000329_780 0.0551355675 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
5 Hb_000520_040 0.0595536791 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
6 Hb_004032_280 0.0606287269 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
7 Hb_002374_180 0.0703765944 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
8 Hb_028491_010 0.0716111032 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
9 Hb_166718_010 0.0717159264 - - heat-shock protein, putative [Ricinus communis]
10 Hb_001735_040 0.0727596986 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
11 Hb_005337_100 0.0732226036 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
12 Hb_147028_010 0.0762918125 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
13 Hb_003163_010 0.077992887 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
14 Hb_001047_210 0.07882637 - - PSI reaction center subunit II [Citrus sinensis]
15 Hb_008847_050 0.0794318174 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005532_030 0.0813731492 - - DNA binding protein, putative [Ricinus communis]
17 Hb_004607_110 0.0830245026 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
18 Hb_001141_100 0.0849097367 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
19 Hb_002336_050 0.0851313158 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000803_080 0.0854971682 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_008536_020 Hb_008536_020 Hb_002600_170 Hb_002600_170 Hb_008536_020--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_008536_020--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_008536_020--Hb_000329_780 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_004032_280 Hb_004032_280 Hb_008536_020--Hb_004032_280 Hb_002374_180 Hb_002374_180 Hb_008536_020--Hb_002374_180 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_006831_090 Hb_002600_170--Hb_000329_780 Hb_002600_170--Hb_004032_280 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_004032_280 Hb_006831_090--Hb_002374_180 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_002374_180 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_000500_240 Hb_000500_240 Hb_000520_040--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_000520_040--Hb_001047_210 Hb_000329_440 Hb_000329_440 Hb_000520_040--Hb_000329_440 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_004032_280--Hb_000329_780 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_006075_030 Hb_006075_030 Hb_002374_180--Hb_006075_030 Hb_002374_180--Hb_005532_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.46527 4.85295 5.8249 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.2705 8.67266

CAGE analysis