Hb_008554_010

Information

Type -
Description -
Location Contig8554: 4568-5075
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_010 0.0 - - -
2 Hb_001373_080 0.0976186347 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_004195_030 0.1401761895 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
4 Hb_001131_070 0.1464060521 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
5 Hb_002461_080 0.1464450295 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
6 Hb_000431_180 0.1543219619 - - PREDICTED: peroxidase 55 [Jatropha curcas]
7 Hb_000331_690 0.1558945731 - - PREDICTED: F-box/WD repeat-containing protein 11-like [Jatropha curcas]
8 Hb_001131_100 0.1608134257 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
9 Hb_000431_030 0.1707866963 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
10 Hb_002248_090 0.172692114 - - metallothionein 3-like protein [Hevea brasiliensis]
11 Hb_005147_020 0.176068246 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
12 Hb_000181_450 0.1773116169 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
13 Hb_000270_010 0.1857021589 - - conserved hypothetical protein [Ricinus communis]
14 Hb_066320_010 0.1858694636 - - hypothetical protein VITISV_027639 [Vitis vinifera]
15 Hb_005380_030 0.1914091857 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
16 Hb_011928_030 0.192326349 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
17 Hb_000509_040 0.1927651906 - - hypothetical protein VITISV_009716 [Vitis vinifera]
18 Hb_131591_010 0.1935859726 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
19 Hb_073096_010 0.1962058178 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
20 Hb_000101_140 0.1979808034 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_008554_010 Hb_008554_010 Hb_001373_080 Hb_001373_080 Hb_008554_010--Hb_001373_080 Hb_004195_030 Hb_004195_030 Hb_008554_010--Hb_004195_030 Hb_001131_070 Hb_001131_070 Hb_008554_010--Hb_001131_070 Hb_002461_080 Hb_002461_080 Hb_008554_010--Hb_002461_080 Hb_000431_180 Hb_000431_180 Hb_008554_010--Hb_000431_180 Hb_000331_690 Hb_000331_690 Hb_008554_010--Hb_000331_690 Hb_131591_010 Hb_131591_010 Hb_001373_080--Hb_131591_010 Hb_001373_080--Hb_000431_180 Hb_001691_190 Hb_001691_190 Hb_001373_080--Hb_001691_190 Hb_002621_030 Hb_002621_030 Hb_001373_080--Hb_002621_030 Hb_002248_090 Hb_002248_090 Hb_001373_080--Hb_002248_090 Hb_131957_010 Hb_131957_010 Hb_004195_030--Hb_131957_010 Hb_005396_110 Hb_005396_110 Hb_004195_030--Hb_005396_110 Hb_132517_010 Hb_132517_010 Hb_004195_030--Hb_132517_010 Hb_087468_010 Hb_087468_010 Hb_004195_030--Hb_087468_010 Hb_160459_030 Hb_160459_030 Hb_004195_030--Hb_160459_030 Hb_073096_010 Hb_073096_010 Hb_001131_070--Hb_073096_010 Hb_001131_070--Hb_004195_030 Hb_000699_190 Hb_000699_190 Hb_001131_070--Hb_000699_190 Hb_001131_070--Hb_002461_080 Hb_001131_070--Hb_001373_080 Hb_000181_450 Hb_000181_450 Hb_002461_080--Hb_000181_450 Hb_011861_110 Hb_011861_110 Hb_002461_080--Hb_011861_110 Hb_002461_080--Hb_001373_080 Hb_002461_080--Hb_073096_010 Hb_000703_320 Hb_000703_320 Hb_000431_180--Hb_000703_320 Hb_000270_010 Hb_000270_010 Hb_000431_180--Hb_000270_010 Hb_005147_020 Hb_005147_020 Hb_000431_180--Hb_005147_020 Hb_000431_180--Hb_131591_010 Hb_017661_020 Hb_017661_020 Hb_000431_180--Hb_017661_020 Hb_069232_010 Hb_069232_010 Hb_000431_180--Hb_069232_010 Hb_017417_020 Hb_017417_020 Hb_000331_690--Hb_017417_020 Hb_000331_690--Hb_069232_010 Hb_001131_100 Hb_001131_100 Hb_000331_690--Hb_001131_100 Hb_000331_690--Hb_000270_010 Hb_005380_030 Hb_005380_030 Hb_000331_690--Hb_005380_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.74331 0.0546889 0.331718 0 0.0594674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.204383 0

CAGE analysis