Hb_008554_030

Information

Type -
Description -
Location Contig8554: 18393-27641
Sequence    

Annotation

kegg
ID rcu:RCOM_0219890
description chaperone protein DNAj, putative
nr
ID XP_012072555.1
description PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8DKR7
description Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2
trembl
ID A0A067L1C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05348 PE=3 SV=1
Gene Ontology
ID GO:0005524
description dnaj homolog mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60537: 18455-25611 , PASA_asmbl_60538: 23421-23942 , PASA_asmbl_60539: 20833-21283
cDNA
(Sanger)
(ID:Location)		 007_A19.ab1: 19618-25611

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_030 0.0 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
2 Hb_027295_050 0.066825013 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
3 Hb_017358_030 0.0781675065 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
4 Hb_007632_030 0.0807511753 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
5 Hb_007389_010 0.0831712798 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
6 Hb_000165_250 0.0848196563 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
7 Hb_005496_130 0.0863338641 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
8 Hb_006502_090 0.0873045335 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
9 Hb_000856_110 0.0882089069 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
10 Hb_012799_180 0.0900622715 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
11 Hb_023386_020 0.0906044297 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
12 Hb_013607_030 0.0913232581 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
13 Hb_009421_020 0.0914954734 - - PREDICTED: caltractin-like [Jatropha curcas]
14 Hb_000029_050 0.0916589782 - - expressed protein, putative [Ricinus communis]
15 Hb_004100_080 0.0928252277 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008785_040 0.0929125792 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
17 Hb_002027_250 0.0932126732 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002888_030 0.0956224729 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
19 Hb_000365_120 0.0956333323 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
20 Hb_000866_010 0.0957174239 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008554_030 Hb_008554_030 Hb_027295_050 Hb_027295_050 Hb_008554_030--Hb_027295_050 Hb_017358_030 Hb_017358_030 Hb_008554_030--Hb_017358_030 Hb_007632_030 Hb_007632_030 Hb_008554_030--Hb_007632_030 Hb_007389_010 Hb_007389_010 Hb_008554_030--Hb_007389_010 Hb_000165_250 Hb_000165_250 Hb_008554_030--Hb_000165_250 Hb_005496_130 Hb_005496_130 Hb_008554_030--Hb_005496_130 Hb_000201_100 Hb_000201_100 Hb_027295_050--Hb_000201_100 Hb_027295_050--Hb_017358_030 Hb_000453_050 Hb_000453_050 Hb_027295_050--Hb_000453_050 Hb_013607_030 Hb_013607_030 Hb_027295_050--Hb_013607_030 Hb_027295_050--Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_017358_030--Hb_007389_010 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_007389_010--Hb_000866_260 Hb_000614_160 Hb_000614_160 Hb_007389_010--Hb_000614_160 Hb_000866_010 Hb_000866_010 Hb_007389_010--Hb_000866_010 Hb_002235_250 Hb_002235_250 Hb_007389_010--Hb_002235_250 Hb_032264_070 Hb_032264_070 Hb_007389_010--Hb_032264_070 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_005496_130--Hb_000291_050 Hb_009767_110 Hb_009767_110 Hb_005496_130--Hb_009767_110 Hb_002725_120 Hb_002725_120 Hb_005496_130--Hb_002725_120 Hb_005496_130--Hb_000029_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.2849 40.8637 41.1299 22.0774 70.2574 57.3506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.9489 77.283 53.0964 21.7052 58.5065

CAGE analysis