Hb_008554_090

Information

Type -
Description -
Location Contig8554: 56207-62113
Sequence    

Annotation

kegg
ID rcu:RCOM_0571480
description zinc finger protein, putative
nr
ID XP_002529559.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8VYZ0
description E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1
trembl
ID B9SU90
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0571480 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase orthrus 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60543: 58331-59669 , PASA_asmbl_60546: 61799-62009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_090 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002110_060 0.0885334411 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
3 Hb_005730_070 0.098538151 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
4 Hb_009070_030 0.1201800688 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
5 Hb_004525_110 0.1258139744 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
6 Hb_150730_010 0.1271181037 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
7 Hb_042083_060 0.1335923293 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
8 Hb_001454_290 0.1345606538 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
9 Hb_033312_050 0.1361579599 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
10 Hb_001349_020 0.1366193818 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
11 Hb_000057_180 0.1376663086 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
12 Hb_006920_040 0.1399232592 - - PREDICTED: uncharacterized protein LOC103341644 [Prunus mume]
13 Hb_009778_050 0.1411225101 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
14 Hb_000723_050 0.1421570658 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
15 Hb_000022_280 0.1430805161 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
16 Hb_001002_090 0.1435932057 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
17 Hb_010174_170 0.1440285689 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
18 Hb_001723_070 0.1490863613 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
19 Hb_010164_020 0.1497412024 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
20 Hb_011472_020 0.1530991194 - - PREDICTED: mucin-17-like [Jatropha curcas]

Gene co-expression network

sample Hb_008554_090 Hb_008554_090 Hb_002110_060 Hb_002110_060 Hb_008554_090--Hb_002110_060 Hb_005730_070 Hb_005730_070 Hb_008554_090--Hb_005730_070 Hb_009070_030 Hb_009070_030 Hb_008554_090--Hb_009070_030 Hb_004525_110 Hb_004525_110 Hb_008554_090--Hb_004525_110 Hb_150730_010 Hb_150730_010 Hb_008554_090--Hb_150730_010 Hb_042083_060 Hb_042083_060 Hb_008554_090--Hb_042083_060 Hb_002110_060--Hb_009070_030 Hb_162286_030 Hb_162286_030 Hb_002110_060--Hb_162286_030 Hb_000009_130 Hb_000009_130 Hb_002110_060--Hb_000009_130 Hb_002110_060--Hb_005730_070 Hb_001454_290 Hb_001454_290 Hb_002110_060--Hb_001454_290 Hb_001349_020 Hb_001349_020 Hb_005730_070--Hb_001349_020 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_000017_320 Hb_000017_320 Hb_005730_070--Hb_000017_320 Hb_002304_190 Hb_002304_190 Hb_005730_070--Hb_002304_190 Hb_002003_010 Hb_002003_010 Hb_005730_070--Hb_002003_010 Hb_009070_030--Hb_042083_060 Hb_010598_010 Hb_010598_010 Hb_009070_030--Hb_010598_010 Hb_001002_090 Hb_001002_090 Hb_009070_030--Hb_001002_090 Hb_055440_010 Hb_055440_010 Hb_009070_030--Hb_055440_010 Hb_022092_050 Hb_022092_050 Hb_004525_110--Hb_022092_050 Hb_000696_030 Hb_000696_030 Hb_004525_110--Hb_000696_030 Hb_004551_050 Hb_004551_050 Hb_004525_110--Hb_004551_050 Hb_033312_050 Hb_033312_050 Hb_004525_110--Hb_033312_050 Hb_004525_110--Hb_001349_020 Hb_011861_020 Hb_011861_020 Hb_150730_010--Hb_011861_020 Hb_150730_010--Hb_000057_180 Hb_002003_030 Hb_002003_030 Hb_150730_010--Hb_002003_030 Hb_009778_050 Hb_009778_050 Hb_150730_010--Hb_009778_050 Hb_116469_010 Hb_116469_010 Hb_150730_010--Hb_116469_010 Hb_000471_010 Hb_000471_010 Hb_150730_010--Hb_000471_010 Hb_042083_060--Hb_010598_010 Hb_042083_060--Hb_002110_060 Hb_042083_060--Hb_004525_110 Hb_042083_060--Hb_001454_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0260482 1.8874 3.617 2.33302 0.0140266 0.103474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0170039 0.0267605 0.0255262 5.77415 0.512347

CAGE analysis