Hb_008556_020

Information

Type -
Description -
Location Contig8556: 67278-67751
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008556_020 0.0 - - -
2 Hb_005962_010 0.1334893532 - - -
3 Hb_119886_040 0.1618675572 - - -
4 Hb_000078_170 0.1656073557 - - -
5 Hb_011639_150 0.1720862198 - - -
6 Hb_002311_230 0.1780418776 - - -
7 Hb_007044_010 0.1993666613 - - -
8 Hb_000483_180 0.2185863156 - - -
9 Hb_008616_030 0.2189119879 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
10 Hb_001766_040 0.2266082078 - - chaperone clpb, putative [Ricinus communis]
11 Hb_001709_130 0.2276930552 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_045870_010 0.2284092316 - - -
13 Hb_011639_010 0.2317462451 - - -
14 Hb_007257_010 0.2325175048 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
15 Hb_000330_080 0.23275186 - - auxilin, putative [Ricinus communis]
16 Hb_001235_100 0.2377682071 - - heat-shock protein, putative [Ricinus communis]
17 Hb_000260_370 0.2402114449 - - protein phosphatase-1, putative [Ricinus communis]
18 Hb_000062_110 0.2432419451 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
19 Hb_000941_140 0.2433000093 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
20 Hb_004254_110 0.2496956505 - - -

Gene co-expression network

sample Hb_008556_020 Hb_008556_020 Hb_005962_010 Hb_005962_010 Hb_008556_020--Hb_005962_010 Hb_119886_040 Hb_119886_040 Hb_008556_020--Hb_119886_040 Hb_000078_170 Hb_000078_170 Hb_008556_020--Hb_000078_170 Hb_011639_150 Hb_011639_150 Hb_008556_020--Hb_011639_150 Hb_002311_230 Hb_002311_230 Hb_008556_020--Hb_002311_230 Hb_007044_010 Hb_007044_010 Hb_008556_020--Hb_007044_010 Hb_005962_010--Hb_000078_170 Hb_005962_010--Hb_002311_230 Hb_005962_010--Hb_011639_150 Hb_001766_040 Hb_001766_040 Hb_005962_010--Hb_001766_040 Hb_005962_010--Hb_119886_040 Hb_000483_180 Hb_000483_180 Hb_119886_040--Hb_000483_180 Hb_119886_040--Hb_002311_230 Hb_007223_010 Hb_007223_010 Hb_119886_040--Hb_007223_010 Hb_011639_010 Hb_011639_010 Hb_119886_040--Hb_011639_010 Hb_000078_170--Hb_011639_150 Hb_000330_080 Hb_000330_080 Hb_000078_170--Hb_000330_080 Hb_001709_130 Hb_001709_130 Hb_000078_170--Hb_001709_130 Hb_000078_170--Hb_002311_230 Hb_011639_150--Hb_001709_130 Hb_011639_150--Hb_119886_040 Hb_011639_150--Hb_002311_230 Hb_002311_230--Hb_000483_180 Hb_002311_230--Hb_007044_010 Hb_002311_230--Hb_011639_010 Hb_007044_010--Hb_011639_010 Hb_008616_030 Hb_008616_030 Hb_007044_010--Hb_008616_030 Hb_004631_160 Hb_004631_160 Hb_007044_010--Hb_004631_160 Hb_001522_010 Hb_001522_010 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.13733 12.4032 2.33192 2.68154 31.5426 8.92999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.688806 0.271261 3.80243 15.1711

CAGE analysis