Hb_008566_030

Information

Type -
Description -
Location Contig8566: 40463-46643
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02780g
description hypothetical protein
nr
ID XP_006375779.1
description hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
swissprot
ID O23732
description Glutathione synthetase, chloroplastic OS=Brassica juncea GN=GSH2 PE=2 SV=1
trembl
ID U5FUH4
description Glutathione synthetase OS=Populus trichocarpa GN=POPTR_0013s02780g PE=3 SV=1
Gene Ontology
ID GO:0004363
description glutathione chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60627: 40605-41029 , PASA_asmbl_60628: 41957-42706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_030 0.0 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
2 Hb_001307_030 0.0662814312 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
3 Hb_001541_120 0.0824544075 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_000116_260 0.0824815769 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
5 Hb_002677_020 0.0846829601 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
6 Hb_001514_120 0.0853942929 - - hypothetical protein VITISV_015004 [Vitis vinifera]
7 Hb_007416_060 0.0869238806 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
8 Hb_000454_090 0.0883493598 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
9 Hb_000436_130 0.0895242474 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
10 Hb_001892_070 0.0899869761 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
11 Hb_000733_180 0.0912859033 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
12 Hb_003086_080 0.0919352935 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
13 Hb_000928_070 0.0925620387 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_000406_130 0.093825518 - - vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_000140_090 0.0978865851 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
16 Hb_000110_140 0.0993901817 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
17 Hb_005488_200 0.0994288063 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
18 Hb_000288_030 0.0995142334 - - PREDICTED: syntaxin-32 [Jatropha curcas]
19 Hb_000403_070 0.0999466105 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_185255_010 0.10057528 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_008566_030 Hb_008566_030 Hb_001307_030 Hb_001307_030 Hb_008566_030--Hb_001307_030 Hb_001541_120 Hb_001541_120 Hb_008566_030--Hb_001541_120 Hb_000116_260 Hb_000116_260 Hb_008566_030--Hb_000116_260 Hb_002677_020 Hb_002677_020 Hb_008566_030--Hb_002677_020 Hb_001514_120 Hb_001514_120 Hb_008566_030--Hb_001514_120 Hb_007416_060 Hb_007416_060 Hb_008566_030--Hb_007416_060 Hb_025098_010 Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_000928_070 Hb_000928_070 Hb_001541_120--Hb_000928_070 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_008421_020 Hb_008421_020 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_001352_020 Hb_001352_020 Hb_000116_260--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000116_260--Hb_000497_300 Hb_000116_260--Hb_007416_060 Hb_164010_030 Hb_164010_030 Hb_000116_260--Hb_164010_030 Hb_000471_110 Hb_000471_110 Hb_000116_260--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000116_260--Hb_000406_130 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_001489_110 Hb_001489_110 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060 Hb_000288_030 Hb_000288_030 Hb_001514_120--Hb_000288_030 Hb_001514_120--Hb_000928_070 Hb_005162_060 Hb_005162_060 Hb_001514_120--Hb_005162_060 Hb_000856_010 Hb_000856_010 Hb_001514_120--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_001514_120--Hb_012022_040 Hb_001514_120--Hb_001541_120 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06541 3.04796 4.34822 8.26016 2.75596 3.27986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58201 9.11004 9.63041 4.74723 9.3554

CAGE analysis