Hb_008566_050

Information

Type -
Description -
Location Contig8566: 50979-54134
Sequence    

Annotation

kegg
ID rcu:RCOM_1430270
description phosphoglycerate mutase, putative
nr
ID XP_002512328.1
description phosphoglycerate mutase, putative [Ricinus communis]
swissprot
ID Q9MAA2
description Phosphoglycerate mutase-like protein AT74 OS=Arabidopsis thaliana GN=At3g05170 PE=2 SV=1
trembl
ID B9RF09
description Phosphoglycerate mutase, putative OS=Ricinus communis GN=RCOM_1430270 PE=4 SV=1
Gene Ontology
ID GO:0003824
description phosphoglycerate mutase-like protein at74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60631: 51108-53743 , PASA_asmbl_60632: 53774-54058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_050 0.0 - - phosphoglycerate mutase, putative [Ricinus communis]
2 Hb_000039_160 0.0701358905 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
3 Hb_000117_090 0.0752343203 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
4 Hb_001437_150 0.0884789412 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
5 Hb_000155_200 0.0931692027 - - Rab7 [Hevea brasiliensis]
6 Hb_004705_080 0.0937065622 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
7 Hb_001123_130 0.0946752325 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000424_200 0.0954222387 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
9 Hb_000086_280 0.0959052261 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
10 Hb_012760_070 0.0989861923 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_005545_100 0.0992001798 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
12 Hb_010812_120 0.1016105962 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
13 Hb_000527_060 0.102844832 - - Protein C20orf11, putative [Ricinus communis]
14 Hb_158445_010 0.103293344 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
15 Hb_000120_960 0.1059423872 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_002284_200 0.1068505299 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
17 Hb_000261_140 0.1068828954 - - -
18 Hb_001245_100 0.1093033255 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
19 Hb_002217_020 0.1101134584 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
20 Hb_003349_090 0.1103436754 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_008566_050 Hb_008566_050 Hb_000039_160 Hb_000039_160 Hb_008566_050--Hb_000039_160 Hb_000117_090 Hb_000117_090 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_000039_160--Hb_000117_090 Hb_000529_170 Hb_000529_170 Hb_000039_160--Hb_000529_170 Hb_008725_260 Hb_008725_260 Hb_000039_160--Hb_008725_260 Hb_001245_100 Hb_001245_100 Hb_000039_160--Hb_001245_100 Hb_000039_160--Hb_000155_200 Hb_000366_090 Hb_000366_090 Hb_000117_090--Hb_000366_090 Hb_168319_030 Hb_168319_030 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_000856_380 Hb_000856_380 Hb_001437_150--Hb_000856_380 Hb_001437_150--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_001437_150--Hb_000527_060 Hb_004162_130 Hb_004162_130 Hb_001437_150--Hb_004162_130 Hb_012286_030 Hb_012286_030 Hb_001437_150--Hb_012286_030 Hb_012114_070 Hb_012114_070 Hb_000155_200--Hb_012114_070 Hb_000205_090 Hb_000205_090 Hb_000155_200--Hb_000205_090 Hb_004109_170 Hb_004109_170 Hb_000155_200--Hb_004109_170 Hb_000367_160 Hb_000367_160 Hb_000155_200--Hb_000367_160 Hb_000120_960 Hb_000120_960 Hb_000155_200--Hb_000120_960 Hb_000340_570 Hb_000340_570 Hb_000155_200--Hb_000340_570 Hb_000413_280 Hb_000413_280 Hb_004705_080--Hb_000413_280 Hb_000111_450 Hb_000111_450 Hb_004705_080--Hb_000111_450 Hb_012760_070 Hb_012760_070 Hb_004705_080--Hb_012760_070 Hb_002016_080 Hb_002016_080 Hb_004705_080--Hb_002016_080 Hb_000424_200 Hb_000424_200 Hb_004705_080--Hb_000424_200 Hb_001123_130--Hb_000527_060 Hb_000261_140 Hb_000261_140 Hb_001123_130--Hb_000261_140 Hb_000667_070 Hb_000667_070 Hb_001123_130--Hb_000667_070 Hb_002995_020 Hb_002995_020 Hb_001123_130--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_001123_130--Hb_000656_240 Hb_001484_070 Hb_001484_070 Hb_001123_130--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.51171 3.25773 3.84902 2.73365 2.13615 2.12912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25219 8.11156 6.7388 2.52366 1.74512

CAGE analysis