Hb_008566_070

Information

Type -
Description -
Location Contig8566: 73692-74312
Sequence    

Annotation

kegg
ID rcu:RCOM_1430120
description hypothetical protein
nr
ID XP_002512325.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF06
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_111985_090 0.0891412004 - - hypothetical protein RCOM_1595950 [Ricinus communis]
3 Hb_008200_010 0.0918092397 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
4 Hb_005643_080 0.1006255552 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
5 Hb_001502_010 0.1029654659 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
6 Hb_000227_350 0.1048181551 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
7 Hb_003906_150 0.1087756714 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
8 Hb_027402_110 0.1104885233 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
9 Hb_000604_050 0.1117876488 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
10 Hb_006590_040 0.1178695581 - - amino acid permease, putative [Ricinus communis]
11 Hb_000201_050 0.1194789775 - - -
12 Hb_001675_260 0.1227069747 - - nitrate transporter, putative [Ricinus communis]
13 Hb_004007_190 0.122734332 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
14 Hb_003529_010 0.1231513956 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
15 Hb_002783_210 0.1238657012 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
16 Hb_002116_020 0.1294603984 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
17 Hb_001318_180 0.1307742512 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
18 Hb_002374_070 0.1321857116 - - amino acid transporter, putative [Ricinus communis]
19 Hb_001766_140 0.1351323242 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
20 Hb_168031_010 0.1353654608 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]

Gene co-expression network

sample Hb_008566_070 Hb_008566_070 Hb_111985_090 Hb_111985_090 Hb_008566_070--Hb_111985_090 Hb_008200_010 Hb_008200_010 Hb_008566_070--Hb_008200_010 Hb_005643_080 Hb_005643_080 Hb_008566_070--Hb_005643_080 Hb_001502_010 Hb_001502_010 Hb_008566_070--Hb_001502_010 Hb_000227_350 Hb_000227_350 Hb_008566_070--Hb_000227_350 Hb_003906_150 Hb_003906_150 Hb_008566_070--Hb_003906_150 Hb_111985_090--Hb_003906_150 Hb_006590_040 Hb_006590_040 Hb_111985_090--Hb_006590_040 Hb_005054_010 Hb_005054_010 Hb_111985_090--Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_111985_090--Hb_002116_020 Hb_111985_090--Hb_005643_080 Hb_008200_010--Hb_001502_010 Hb_008200_010--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_008200_010--Hb_002374_070 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_008200_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_006951_010 Hb_006951_010 Hb_005643_080--Hb_006951_010 Hb_000604_050 Hb_000604_050 Hb_005643_080--Hb_000604_050 Hb_000201_070 Hb_000201_070 Hb_005643_080--Hb_000201_070 Hb_010267_030 Hb_010267_030 Hb_005643_080--Hb_010267_030 Hb_001502_010--Hb_027402_110 Hb_001502_010--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_001502_010--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_001502_010--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_001502_010--Hb_000429_080 Hb_000227_350--Hb_000201_050 Hb_002170_010 Hb_002170_010 Hb_000227_350--Hb_002170_010 Hb_002186_170 Hb_002186_170 Hb_000227_350--Hb_002186_170 Hb_128216_010 Hb_128216_010 Hb_000227_350--Hb_128216_010 Hb_080601_010 Hb_080601_010 Hb_000227_350--Hb_080601_010 Hb_003906_150--Hb_000604_050 Hb_001318_180 Hb_001318_180 Hb_003906_150--Hb_001318_180 Hb_004007_190 Hb_004007_190 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.270449 23.7457 4.34676 48.7417 0.355402 0.303402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.246995 3.66922

CAGE analysis