Hb_008568_020

Information

Type -
Description -
Location Contig8568: 53400-74169
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26040g
description POPTRDRAFT_561798; hypothetical protein
nr
ID XP_011019676.1
description PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H9D1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26040g PE=4 SV=2
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC105122325 isoform X3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60643: 53488-69518 , PASA_asmbl_60645: 64146-64659 , PASA_asmbl_60646: 69548-74084 , PASA_asmbl_60647: 69548-73066 , PASA_asmbl_60648: 71690-71961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008568_020 0.0 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
2 Hb_003096_060 0.0513160672 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
3 Hb_001635_040 0.0518732748 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
4 Hb_154580_010 0.0526638789 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
5 Hb_000836_410 0.0548711718 - - sec10, putative [Ricinus communis]
6 Hb_000645_170 0.0562654572 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002615_120 0.0573790454 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
8 Hb_001751_140 0.0579531418 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
9 Hb_003927_040 0.0610039582 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
10 Hb_000162_030 0.0640433424 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
11 Hb_128548_010 0.0648944842 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007441_020 0.0653888017 - - Rab6 [Hevea brasiliensis]
13 Hb_008226_090 0.0661904374 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
14 Hb_002805_190 0.0665608853 - - spliceosome associated protein, putative [Ricinus communis]
15 Hb_001377_310 0.066620107 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
16 Hb_032202_080 0.0668294682 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
17 Hb_000230_090 0.0673188015 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
18 Hb_004020_040 0.0674242791 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
19 Hb_000457_230 0.0674750474 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
20 Hb_003861_050 0.0676397672 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]

Gene co-expression network

sample Hb_008568_020 Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_002067_030 Hb_002067_030 Hb_154580_010--Hb_002067_030 Hb_154580_010--Hb_000645_170 Hb_005289_040 Hb_005289_040 Hb_154580_010--Hb_005289_040 Hb_026980_020 Hb_026980_020 Hb_154580_010--Hb_026980_020 Hb_000390_230 Hb_000390_230 Hb_000836_410--Hb_000390_230 Hb_000230_090 Hb_000230_090 Hb_000836_410--Hb_000230_090 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000457_230 Hb_000457_230 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_032202_080 Hb_032202_080 Hb_002615_120--Hb_032202_080 Hb_002615_120--Hb_000457_230 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4584 17.8492 19.9781 13.3801 14.3446 16.7028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.22527 9.90657 7.7558 12.3995 11.7573

CAGE analysis