Hb_008578_010

Information

Type -
Description -
Location Contig8578: 1965-9987
Sequence    

Annotation

kegg
ID rcu:RCOM_0903830
description 30S ribosomal protein S19, putative
nr
ID XP_002518455.1
description 30S ribosomal protein S19, putative [Ricinus communis]
swissprot
ID P27527
description Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2
trembl
ID B9RXI6
description 30S ribosomal protein S19, putative OS=Ricinus communis GN=RCOM_0903830 PE=3 SV=1
Gene Ontology
ID GO:0005763
description ribosomal protein s19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60660: 8714-10661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008578_010 0.0 - - 30S ribosomal protein S19, putative [Ricinus communis]
2 Hb_006816_150 0.0792009514 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
3 Hb_002784_040 0.089091086 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
4 Hb_001021_230 0.0927532966 - - -
5 Hb_000742_140 0.095196106 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000098_190 0.101008245 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
7 Hb_001369_650 0.101513869 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
8 Hb_000714_030 0.1071479851 - - Nucleosome assembly [Gossypium arboreum]
9 Hb_000462_140 0.1088882424 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
10 Hb_000157_030 0.1089350543 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
11 Hb_011828_050 0.1108939442 - - 40S ribosomal protein S23, putative [Ricinus communis]
12 Hb_070739_010 0.1113388416 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
13 Hb_009767_120 0.1123395458 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
14 Hb_003001_060 0.1125882492 - - wound-responsive family protein [Populus trichocarpa]
15 Hb_000933_180 0.1127139885 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
16 Hb_011805_080 0.1135216458 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
17 Hb_004440_050 0.114637875 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
18 Hb_001047_100 0.1147359595 - - 40S ribosomal protein S18, putative [Ricinus communis]
19 Hb_000621_060 0.1154036808 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
20 Hb_010810_050 0.1156648006 - - hypothetical protein [Cleome spinosa]

Gene co-expression network

sample Hb_008578_010 Hb_008578_010 Hb_006816_150 Hb_006816_150 Hb_008578_010--Hb_006816_150 Hb_002784_040 Hb_002784_040 Hb_008578_010--Hb_002784_040 Hb_001021_230 Hb_001021_230 Hb_008578_010--Hb_001021_230 Hb_000742_140 Hb_000742_140 Hb_008578_010--Hb_000742_140 Hb_000098_190 Hb_000098_190 Hb_008578_010--Hb_000098_190 Hb_001369_650 Hb_001369_650 Hb_008578_010--Hb_001369_650 Hb_006816_150--Hb_002784_040 Hb_010810_050 Hb_010810_050 Hb_006816_150--Hb_010810_050 Hb_000019_230 Hb_000019_230 Hb_006816_150--Hb_000019_230 Hb_006816_150--Hb_001369_650 Hb_003120_060 Hb_003120_060 Hb_006816_150--Hb_003120_060 Hb_002784_040--Hb_000098_190 Hb_002784_040--Hb_001369_650 Hb_001623_330 Hb_001623_330 Hb_002784_040--Hb_001623_330 Hb_003001_060 Hb_003001_060 Hb_002784_040--Hb_003001_060 Hb_000621_060 Hb_000621_060 Hb_001021_230--Hb_000621_060 Hb_000065_080 Hb_000065_080 Hb_001021_230--Hb_000065_080 Hb_003544_090 Hb_003544_090 Hb_001021_230--Hb_003544_090 Hb_007632_250 Hb_007632_250 Hb_001021_230--Hb_007632_250 Hb_000270_360 Hb_000270_360 Hb_001021_230--Hb_000270_360 Hb_000714_030 Hb_000714_030 Hb_000742_140--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000742_140--Hb_000084_290 Hb_000933_180 Hb_000933_180 Hb_000742_140--Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_000742_140--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000742_140--Hb_011828_050 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_000098_190--Hb_000714_030 Hb_000098_190--Hb_006816_150 Hb_000933_050 Hb_000933_050 Hb_000098_190--Hb_000933_050 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_001369_650--Hb_003001_060 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080 Hb_001369_650--Hb_009767_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82731 1.53137 1.39819 0.915164 5.05709 5.89475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27911 6.38409 1.09529 1.59602 1.34816

CAGE analysis