Hb_008616_060

Information

Type -
Description -
Location Contig8616: 66348-67492
Sequence    

Annotation

kegg
ID rcu:RCOM_0420140
description syntaxin, putative
nr
ID XP_002524068.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9ZSD4
description Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1
trembl
ID B9SDJ9
description Syntaxin, putative OS=Ricinus communis GN=RCOM_0420140 PE=3 SV=1
Gene Ontology
ID GO:0016020
description syntaxin 121 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008616_060 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_004230_060 0.1468746582 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
3 Hb_001810_010 0.1502577399 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
4 Hb_002217_440 0.1592853118 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000333_130 0.1728209638 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_003504_040 0.1734423852 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
7 Hb_010962_030 0.1742027045 - - kinase, putative [Ricinus communis]
8 Hb_001363_030 0.1825684842 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
9 Hb_001009_110 0.1831960458 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
10 Hb_005588_020 0.1860511921 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
11 Hb_005054_300 0.1861183993 - - aquaporin [Hevea brasiliensis]
12 Hb_118777_010 0.1871875809 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_013057_030 0.1884539171 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006501_170 0.1896551622 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
15 Hb_002219_090 0.1913513979 - - protein kinase atmrk1, putative [Ricinus communis]
16 Hb_002272_140 0.193940611 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
17 Hb_048653_020 0.1976841406 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_011054_030 0.1996880154 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
19 Hb_038758_010 0.2005349064 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_000343_260 0.2010986707 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]

Gene co-expression network

sample Hb_008616_060 Hb_008616_060 Hb_004230_060 Hb_004230_060 Hb_008616_060--Hb_004230_060 Hb_001810_010 Hb_001810_010 Hb_008616_060--Hb_001810_010 Hb_002217_440 Hb_002217_440 Hb_008616_060--Hb_002217_440 Hb_000333_130 Hb_000333_130 Hb_008616_060--Hb_000333_130 Hb_003504_040 Hb_003504_040 Hb_008616_060--Hb_003504_040 Hb_010962_030 Hb_010962_030 Hb_008616_060--Hb_010962_030 Hb_001514_100 Hb_001514_100 Hb_004230_060--Hb_001514_100 Hb_002085_070 Hb_002085_070 Hb_004230_060--Hb_002085_070 Hb_000417_030 Hb_000417_030 Hb_004230_060--Hb_000417_030 Hb_000223_050 Hb_000223_050 Hb_004230_060--Hb_000223_050 Hb_004230_060--Hb_010962_030 Hb_012268_010 Hb_012268_010 Hb_001810_010--Hb_012268_010 Hb_000940_020 Hb_000940_020 Hb_001810_010--Hb_000940_020 Hb_001810_010--Hb_002217_440 Hb_005396_100 Hb_005396_100 Hb_001810_010--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_001810_010--Hb_001363_010 Hb_000345_190 Hb_000345_190 Hb_001810_010--Hb_000345_190 Hb_013057_030 Hb_013057_030 Hb_002217_440--Hb_013057_030 Hb_048653_020 Hb_048653_020 Hb_002217_440--Hb_048653_020 Hb_000417_290 Hb_000417_290 Hb_002217_440--Hb_000417_290 Hb_048653_040 Hb_048653_040 Hb_002217_440--Hb_048653_040 Hb_106969_010 Hb_106969_010 Hb_000333_130--Hb_106969_010 Hb_011791_010 Hb_011791_010 Hb_000333_130--Hb_011791_010 Hb_149056_010 Hb_149056_010 Hb_000333_130--Hb_149056_010 Hb_001009_110 Hb_001009_110 Hb_000333_130--Hb_001009_110 Hb_001073_060 Hb_001073_060 Hb_000333_130--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000333_130--Hb_002219_090 Hb_000685_060 Hb_000685_060 Hb_003504_040--Hb_000685_060 Hb_002774_090 Hb_002774_090 Hb_003504_040--Hb_002774_090 Hb_003299_010 Hb_003299_010 Hb_003504_040--Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_003504_040--Hb_005157_010 Hb_067034_030 Hb_067034_030 Hb_003504_040--Hb_067034_030 Hb_007371_020 Hb_007371_020 Hb_010962_030--Hb_007371_020 Hb_021596_070 Hb_021596_070 Hb_010962_030--Hb_021596_070 Hb_000146_110 Hb_000146_110 Hb_010962_030--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_010962_030--Hb_041290_030 Hb_000003_620 Hb_000003_620 Hb_010962_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010962_030--Hb_009778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.704191 18.3151 1.26277 1.05231 0.0628119 0.0751582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.683913 0.384221 0.212569 5.96002 0.787658

CAGE analysis