Hb_008616_070

Information

Type -
Description -
Location Contig8616: 70378-90384
Sequence    

Annotation

kegg
ID rcu:RCOM_0420030
description hypothetical protein
nr
ID XP_012074300.1
description PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
swissprot
ID Q9Y2L5
description Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2
trembl
ID A0A067KIZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08746 PE=4 SV=1
Gene Ontology
ID GO:0005515
description trafficking protein particle complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60833: 70385-74118 , PASA_asmbl_60835: 75767-85269 , PASA_asmbl_60836: 82195-90346 , PASA_asmbl_60837: 75767-82636 , PASA_asmbl_60838: 79433-81736 , PASA_asmbl_60839: 86230-90249 , PASA_asmbl_60840: 81771-82115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008616_070 0.0 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
2 Hb_001507_040 0.0655728523 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002660_070 0.0673590875 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
4 Hb_020805_130 0.0831414292 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_004705_120 0.0866332095 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001904_090 0.0891481906 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
7 Hb_015778_010 0.0896535652 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
8 Hb_001014_040 0.0898952912 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
9 Hb_000445_040 0.089898992 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
10 Hb_000108_070 0.0910223561 - - alpha-tubulin 1 [Hevea brasiliensis]
11 Hb_002005_020 0.0925970614 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000373_130 0.095193716 - - PREDICTED: protein FAM188A [Jatropha curcas]
13 Hb_000120_960 0.0962087349 - - isocitrate dehydrogenase, putative [Ricinus communis]
14 Hb_006420_080 0.0983194988 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_004079_030 0.098631897 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
16 Hb_001519_050 0.0996180626 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
17 Hb_010422_060 0.1008574362 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
18 Hb_001902_140 0.1014902512 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
19 Hb_001811_030 0.102052825 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_004837_160 0.1025219307 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008616_070 Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_008616_070--Hb_001507_040 Hb_002660_070 Hb_002660_070 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010 Hb_001507_040--Hb_020805_130 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_000120_960 Hb_000120_960 Hb_002660_070--Hb_000120_960 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_002660_070--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_001519_050 Hb_001519_050 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_004705_120--Hb_015778_010 Hb_001080_280 Hb_001080_280 Hb_004705_120--Hb_001080_280 Hb_001396_100 Hb_001396_100 Hb_001904_090--Hb_001396_100 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_006831_120 Hb_006831_120 Hb_001904_090--Hb_006831_120 Hb_002007_210 Hb_002007_210 Hb_015778_010--Hb_002007_210 Hb_006420_080 Hb_006420_080 Hb_015778_010--Hb_006420_080 Hb_003502_060 Hb_003502_060 Hb_015778_010--Hb_003502_060 Hb_000414_130 Hb_000414_130 Hb_015778_010--Hb_000414_130 Hb_005306_180 Hb_005306_180 Hb_015778_010--Hb_005306_180 Hb_011344_190 Hb_011344_190 Hb_015778_010--Hb_011344_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.17883 6.74587 7.52869 10.5533 8.65332 7.89291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7643 15.5178 27.789 10.5075 8.39803

CAGE analysis