Hb_008623_020

Information

Type -
Description -
Location Contig8623: 17990-21084
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00720g
description POPTRDRAFT_657794; rhomboid family protein
nr
ID XP_012084232.1
description PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
swissprot
ID Q8RXW0
description Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1
trembl
ID A0A067JVV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19107 PE=4 SV=1
Gene Ontology
ID GO:0005886
description rhomboid family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60852: 18098-20821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008623_020 0.0 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
2 Hb_075449_010 0.0717087966 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
3 Hb_000062_220 0.0756984035 - - BnaC02g35870D [Brassica napus]
4 Hb_012019_010 0.0913854237 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
5 Hb_000928_210 0.0915813615 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
6 Hb_000617_150 0.0935682947 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
7 Hb_002256_020 0.0938438225 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007317_200 0.0976635087 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_029879_130 0.0981271296 - - Derlin-2, putative [Ricinus communis]
10 Hb_001699_130 0.0984380157 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
11 Hb_002435_120 0.0987653243 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000120_680 0.0993090438 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
13 Hb_005779_060 0.1001018206 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_002046_180 0.1018258203 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
15 Hb_000876_070 0.1020237851 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
16 Hb_006031_020 0.1022251868 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
17 Hb_002739_100 0.1046466983 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
18 Hb_003053_020 0.1047633908 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
19 Hb_004635_100 0.1053597444 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
20 Hb_001959_190 0.1063136191 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]

Gene co-expression network

sample Hb_008623_020 Hb_008623_020 Hb_075449_010 Hb_075449_010 Hb_008623_020--Hb_075449_010 Hb_000062_220 Hb_000062_220 Hb_008623_020--Hb_000062_220 Hb_012019_010 Hb_012019_010 Hb_008623_020--Hb_012019_010 Hb_000928_210 Hb_000928_210 Hb_008623_020--Hb_000928_210 Hb_000617_150 Hb_000617_150 Hb_008623_020--Hb_000617_150 Hb_002256_020 Hb_002256_020 Hb_008623_020--Hb_002256_020 Hb_002863_050 Hb_002863_050 Hb_075449_010--Hb_002863_050 Hb_075449_010--Hb_000062_220 Hb_075449_010--Hb_012019_010 Hb_000614_160 Hb_000614_160 Hb_075449_010--Hb_000614_160 Hb_005779_060 Hb_005779_060 Hb_075449_010--Hb_005779_060 Hb_000062_220--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_002046_180 Hb_002046_180 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_012019_010--Hb_005779_060 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_012019_010--Hb_000614_160 Hb_000928_210--Hb_000876_070 Hb_004254_120 Hb_004254_120 Hb_000928_210--Hb_004254_120 Hb_002739_100 Hb_002739_100 Hb_000928_210--Hb_002739_100 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_000206_210 Hb_000206_210 Hb_000928_210--Hb_000206_210 Hb_000928_210--Hb_002046_180 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_000723_080 Hb_000723_080 Hb_002256_020--Hb_000723_080 Hb_002256_020--Hb_000928_210 Hb_000230_510 Hb_000230_510 Hb_002256_020--Hb_000230_510 Hb_004306_100 Hb_004306_100 Hb_002256_020--Hb_004306_100 Hb_000732_130 Hb_000732_130 Hb_002256_020--Hb_000732_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.65582 13.0723 8.23371 11.6599 19.6546 13.7376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.444 29.7827 29.2818 9.13732 14.7635

CAGE analysis