Hb_008642_040

Information

Type -
Description -
Location Contig8642: 40753-54777
Sequence    

Annotation

kegg
ID rcu:RCOM_0658890
description nucleolar GTP-binding protein, putative
nr
ID XP_012083768.1
description PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q99ME9
description Nucleolar GTP-binding protein 1 OS=Mus musculus GN=Gtpbp4 PE=2 SV=3
trembl
ID A0A067KAR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14685 PE=4 SV=1
Gene Ontology
ID GO:0016021
description nucleolar gtp-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60879: 40984-41094 , PASA_asmbl_60880: 41095-42448 , PASA_asmbl_60882: 43489-52314 , PASA_asmbl_60883: 54179-54774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008642_040 0.0 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
2 Hb_003440_060 0.0680893278 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
3 Hb_012395_230 0.068492683 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
4 Hb_000331_110 0.0709458852 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
5 Hb_001186_090 0.0814957132 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
6 Hb_000804_040 0.0849467072 - - protein with unknown function [Ricinus communis]
7 Hb_004109_280 0.0853489577 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
8 Hb_000245_220 0.0868338058 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
9 Hb_004970_190 0.0871537015 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_003878_110 0.0879581819 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
11 Hb_000260_100 0.088976434 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002893_070 0.0905604566 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
13 Hb_002338_020 0.0907233932 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
14 Hb_000836_170 0.093934234 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
15 Hb_022132_050 0.094413686 - - GTP binding protein, putative [Ricinus communis]
16 Hb_033153_070 0.0946556346 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
17 Hb_001153_210 0.0950229304 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
18 Hb_002820_050 0.0954728884 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
19 Hb_000740_050 0.0960503644 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
20 Hb_004097_070 0.096655048 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]

Gene co-expression network

sample Hb_008642_040 Hb_008642_040 Hb_003440_060 Hb_003440_060 Hb_008642_040--Hb_003440_060 Hb_012395_230 Hb_012395_230 Hb_008642_040--Hb_012395_230 Hb_000331_110 Hb_000331_110 Hb_008642_040--Hb_000331_110 Hb_001186_090 Hb_001186_090 Hb_008642_040--Hb_001186_090 Hb_000804_040 Hb_000804_040 Hb_008642_040--Hb_000804_040 Hb_004109_280 Hb_004109_280 Hb_008642_040--Hb_004109_280 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_004970_190 Hb_004970_190 Hb_012395_230--Hb_004970_190 Hb_000053_110 Hb_000053_110 Hb_012395_230--Hb_000053_110 Hb_002780_020 Hb_002780_020 Hb_012395_230--Hb_002780_020 Hb_000883_020 Hb_000883_020 Hb_012395_230--Hb_000883_020 Hb_003513_010 Hb_003513_010 Hb_012395_230--Hb_003513_010 Hb_079526_030 Hb_079526_030 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_001186_090--Hb_000331_110 Hb_001186_090--Hb_000260_680 Hb_003943_050 Hb_003943_050 Hb_001186_090--Hb_003943_050 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_022132_050 Hb_022132_050 Hb_001186_090--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_001186_090--Hb_002119_080 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_012022_150 Hb_012022_150 Hb_000804_040--Hb_012022_150 Hb_000753_240 Hb_000753_240 Hb_000804_040--Hb_000753_240 Hb_002997_080 Hb_002997_080 Hb_004109_280--Hb_002997_080 Hb_009545_080 Hb_009545_080 Hb_004109_280--Hb_009545_080 Hb_000260_100 Hb_000260_100 Hb_004109_280--Hb_000260_100 Hb_002272_130 Hb_002272_130 Hb_004109_280--Hb_002272_130 Hb_027472_120 Hb_027472_120 Hb_004109_280--Hb_027472_120 Hb_004109_280--Hb_000883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95704 3.9249 8.52371 4.39041 6.70013 8.59447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.10481 7.41997 2.93796 4.01712 7.13936

CAGE analysis