Hb_008642_060

Information

Type -
Description -
Location Contig8642: 62902-67865
Sequence    

Annotation

kegg
ID rcu:RCOM_0658880
description dynamin, putative
nr
ID XP_012083766.1
description PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
swissprot
ID Q9FNX5
description Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1
trembl
ID A0A067K1J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14684 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 1e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60884: 62788-67755 , PASA_asmbl_60885: 65823-67789
cDNA
(Sanger)
(ID:Location)		 011_N04.ab1: 65823-67789

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008642_060 0.0 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
2 Hb_011457_140 0.0570572685 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
3 Hb_000358_220 0.0580507483 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
4 Hb_003929_210 0.063271552 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_000179_190 0.0677513597 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
6 Hb_000008_280 0.0690748503 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
7 Hb_000030_140 0.0697674522 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
8 Hb_002461_020 0.0723304512 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
9 Hb_003939_060 0.0730527882 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001635_210 0.0762007538 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
11 Hb_000260_760 0.0773295793 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_000110_350 0.0777145609 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
13 Hb_000996_020 0.0821263506 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_005305_100 0.083185345 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_000300_030 0.0856071269 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
16 Hb_000684_350 0.0856314497 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
17 Hb_002600_070 0.0866000161 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
18 Hb_000445_060 0.0873585989 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
19 Hb_000645_130 0.0875032327 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
20 Hb_000806_030 0.0883206647 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]

Gene co-expression network

sample Hb_008642_060 Hb_008642_060 Hb_011457_140 Hb_011457_140 Hb_008642_060--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_008642_060--Hb_000358_220 Hb_003929_210 Hb_003929_210 Hb_008642_060--Hb_003929_210 Hb_000179_190 Hb_000179_190 Hb_008642_060--Hb_000179_190 Hb_000008_280 Hb_000008_280 Hb_008642_060--Hb_000008_280 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_011457_140--Hb_000358_220 Hb_000300_030 Hb_000300_030 Hb_011457_140--Hb_000300_030 Hb_011457_140--Hb_000008_280 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160 Hb_000358_220--Hb_003929_210 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003929_210--Hb_000110_350 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_000996_020 Hb_000996_020 Hb_003929_210--Hb_000996_020 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_000179_190--Hb_170077_010 Hb_013405_180 Hb_013405_180 Hb_000008_280--Hb_013405_180 Hb_000008_280--Hb_000300_030 Hb_000008_280--Hb_000358_220 Hb_000008_280--Hb_000179_190 Hb_000260_760 Hb_000260_760 Hb_000030_140--Hb_000260_760 Hb_002461_020 Hb_002461_020 Hb_000030_140--Hb_002461_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000030_140--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1356 46.1793 36.5416 26.4344 16.7778 23.2615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2424 9.2234 10.3304 22.7553 43.8414

CAGE analysis